Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20punctulatus_20[genbank_20GCA_5F000956255.1_202015-03-19] 20,774 sequences; 146,157,495 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq3577 176 4e-39 seq5576 129 5e-25 seq5408 118 9e-22 seq3192 114 1e-20 >seq3577 Length=7701 Score = 176 bits (194), Expect = 4e-39 Identities = 736/1146 (64%), Gaps = 48/1146 (4%) Strand=Plus/Plus Query 132878 GTCGACGGTAAACTTTGTGGCCTGAGCGGCGGGTTTTGTGCGCAAATAATACATGCCCGT 132937 |||||| || |||| | || | |||| || || ||||||||||| |||||||| || Sbjct 5704 GTCGACCGTGAACTGGATCGCATTTACGGCCGGCTTCGTGCGCAAATAGTACATGCCAGT 5763 Query 132938 TTTCAGTTTTTTCTCCCACGCGTAAAAGTGTATGCTCGACACC--ACCGAGTAAGTGGGT 132995 |||| ||| |||||||| |||||| || | | |||| || ||||| Sbjct 5764 CTTCAAACCCATCTTCCACGCGTGAAAGTGGATCGAGGTAAGTTTACCG--TAGTTGGGT 5821 Query 132996 TCGGCGACAAATAAATTCAGCGATTGACTCTGATCTATGAAAGGAGCACGGTCGGCGGCC 133055 ||||| || || || | |||||| ||| || ||||| | |||| ||||| ||| Sbjct 5822 TCGGCCACGTGTATGTTGAACGATTGGGACTGGTCGATGAACGCTCCACGATCGGCCGCC 5881 Query 133056 ATGTTTATTATACACTTTGATTTGA-TCTCCCATGCCGTCTTGAAGAGATTCTTGACATG 133114 || | || || ||||| | ||||||| |||| ||| | |||| || | Sbjct 5882 ATTTGGATGC-ACGTTTTGACCGAAATCTCCCAAACCGTTTTGTACAGATCGCGCACGTC 5940 Query 133115 CTGTGGTATTTCGTCAATGTTCTGCACGGACCCGTTTTCGGCCAAAATCTTGTTGCGCAA 133174 || |||||||| ||||| ||||| | || ||||| | |||| || |||| || Sbjct 5941 CTTTGGTATTTTCTCAATCTTCTGGATCGATCCGTTGTGCGCCAGGATTGTGTTCTTCAT 6000 Query 133175 TTCCGGAGTGT---AAATGTCGAGATCGATTAGCGCTTTGACGAGATACTGGTTGACCAC 133231 ||| | || | | || | || | || | |||| |||| ||||| || || Sbjct 6001 TTC---ATCGTCCCACAGCCCGTGCGCGGTCAGGTCCTTGATCAGATGATGGTTCACAAC 6057 Query 133232 TTGAAACTCGCCGGCGAGAACGCGTCTGAGATATACATTCGACGTGAACGGTTCGAAAGA 133291 ||||||||||| | || || |||| | || || ||||||||| |||| |||||||| Sbjct 6058 CTGAAACTCGCCCGAAAGCACTCGTCGGTTGTAGACGTTCGACGTGTACGGCTCGAAAGA 6117 Query 133292 TTCGTTGTTGCCGAGTATCTGCGCCGTCGTCGCCGTGGGCATGTACGCCACCAACAAAGA 133351 ||||||||||| | ||| || || |||| || || ||||| || | || || || Sbjct 6118 CTCGTTGTTGCCCAATATTTGAGCAGTCGAAGCTGTTGGCATCGGTGCTAGCAGCAGTGA 6177 Query 133352 GTTTCTTACGCCGTACTTGTTTATGTTGCACTGCAATTCGTTCCAGTCCCACAGATTGTT 133411 ||| | | || | || || || || |||| | ||| | |||||| | Sbjct 6178 GTTACGAATCCCATGTTTTGCGATCTTTTCCTTCAATGCCGCCCAATTCCACAGGT---- 6233 Query 133412 GGAATGATAGACGCCGTTCTCGTCGTCGTAGTTGTGAAAATGCAAAATACCCCTGCTCAC 133471 || || | || | || | ||| | |||| ||| ||| |||| || Sbjct 6234 ----------CCGTCGGT-TCCTTGTTCCACATGTCGTACTGCAGAATGCCCTTGCTTAC 6282 Query 133472 CGGACTGTCCGTGTACGATTCATAGGGTCCGTTGATTTTGGCCAGCTCGCAGCTAGCCTC 133531 ||||| | ||||| || || || || | | ||||| ||||||||||| || Sbjct 6283 CGGACAACCTTCGTACGTCTCGTACGGCCCATCCTTGGCGGCCAATTCGCAGCTAGCTTC 6342 Query 133532 CAAAGCGGCAAAGTAAATGGTTTCCGCGATTGAATAGTTGACGAACCTG-GCATCGTCGC 133590 ||| || || |||| |||||||| ||| | |||| | || || | || | Sbjct 6343 CAACGCCCCATAGTAGATGGTTTCAAATATTTGCTGATTGA-GCTTTTGCGCTTGCTCAC 6401 Query 133591 TATCGTAGGCGATGTCGAGAAGAACAAACGCGTCGGCCAAACCCTGTATGCCGACGCCGA 133650 | ||||| | | | | | | || ||||| ||||||| |||||| | |||| ||||| Sbjct 6402 TCTCGTACGGAAAGCCCATCAAAATGAACGCATCGGCCATACCCTGGACACCGATGCCGA 6461 Query 133651 TGGGTCGATGTTTTTTATTGCTCCTCTCCGACTCGGCCGTGGGATAGTGGTTGACGTCGA 133710 | || || || | || | | || || | | || |||| ||| ||||| | Sbjct 6462 TCGGACGGTGGCGCATGTTCGAGCGTTTCGCTTCCGGCACCGGGTAGTAGTTCACGTCAA 6521 Query 133711 TGATCTTGTTGAGATTGCGGACGATA--ATTTTAGTCAAATGTTTCAGCAAAACATAGTC 133768 |||||||||| |||||||| || || || || | | | ||||| | | | Sbjct 6522 TGATCTTGTTAAGATTGCG--CGTTACGATCTTGGCGACCTCCTTCAG-----CTTCTTG 6574 Query 133769 AAAT-GT-CTTGGCGTCGACGTCGACGCACTTGTTGACGGCAATACTGGCTAGATTACAA 133826 |||| || | | ||| | ||| || |||| | ||||| ||| | ||| || Sbjct 6575 AAATCGTACGTACGATCGGGCTGGACAAACATGTTCAACGCAATCGAGGCCAAATTGCAC 6634 Query 133827 ACGGCCGTCTCGTTC-TCGTCGCAATACTGGACGATCTCGGCGCAGAGGTTGCTGCATTT 133885 |||||| |||| | ||| || | |||| || ||||| | ||| ||||| || || Sbjct 6635 ACGGCCACTTCGTCCTTCGACG-AGTACTCCACTATCTCAGTGCAAAGGTTCGAACACTT 6693 Query 133886 GATGGTGCCCAAAtttttttGATTGCTAAAGTTATTGCAATGATCCTTGTATAGCATGTA 133945 ||||||||| | |||| || ||||| | |||||| ||||||||| |||||||| Sbjct 6694 GATGGTGCCGATGTTTTGCTGGTTGCTTTTGCGATTGCACGCATCCTTGTACAGCATGTA 6753 Query 133946 CGGCCCGCCGGTTTCGACGTTGGTCTCGACGAT---AAATCTAAACAAGTCTCTCGCCTT 134002 ||| |||| ||||| || | | ||||| ||| ||| | ||| ||| |||||| Sbjct 6754 CGGTACGCCCGTTTCCACCTGTGACTCGATGATCGCAAACC---ACAGATCTTGCGCCTT 6810 Query 134003 CACCTG 134008 ||| || Sbjct 6811 CACTTG 6816 >seq5576 Length=36905 Score = 129 bits (142), Expect = 5e-25 Identities = 166/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 |||| || || | || | ||||| ||| | || ||||| || || || ||||| || Sbjct 18788 TACCACCACGGAGTCGGAGCACCAGGTGAAGAGTGGACTCCTTCTGGATATTGTAGTCCG 18729 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 || || || ||| || ||||| ||||| ||| |||| |||||||||||||| |||| Sbjct 18728 ACAGGGTACGGCCATCTTCCAGCTGCTTTCCGGCGAAGATCAGACGCTGCTGATCCGGAG 18669 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGA 118689 | ||||| ||||| || ||| || || || | ||||| ||||||| | ||||| Sbjct 18668 GGATGCCTTCCTTATCCTGAATCTTGGCCTTCACATTTTCGATCGTGTCCGAGGGCTCGA 18609 Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 |||| | || | || |||||||| || ||||| || ||||||||||| Sbjct 18608 CCTCAAGAGTGATGGTCTTGCCGGTGAGTGTTTTCACGAAAATCTGCAT 18560 >seq5408 Length=43822 Score = 118 bits (130), Expect = 9e-22 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 118511 ACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCT 118570 ||| ||||| | | | ||||| || | || ||||| || || || ||||||||| Sbjct 36916 ACCACCGCGCAGGCGAAGCACCAGATGAAGGGTCGACTCCTTCTGGATATTGTAATCGGA 36975 Query 118571 CATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGG 118630 || ||||| |||||| ||||| || || ||| ||||||||||||||||||| || || Sbjct 36976 CAGCGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGATCCGGCGG 37035 Query 118631 TATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGAC 118690 || ||||||||||| || || || || | |||| || |||| | |||||| Sbjct 37036 GATACCCTCCTTGTCCTGGATCTTCGCCTTCACATTCTCGATCGTATCCGAGGGCTCGAC 37095 Query 118691 CTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||| | ||| | || || || || || ||||| || || |||||||| Sbjct 37096 CTCAAGGGTAATGGTCTTACCCGTGAGGGTTTTGACGAAGATCTGCAT 37143 >seq3192 Length=14073 Score = 114 bits (126), Expect = 1e-20 Identities = 150/208 (72%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||||||| | || ||||| || || |||||||| ||| || |||||| ||||| Sbjct 209 ACCAAGTGCAAGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGTCCGTCCTCC 150 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||| || || ||| |||| |||||||||||||| ||||| || ||||||||||| Sbjct 149 AGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGAGGGATTCCCTCCTTGTCCTGG 90 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | |||| || |||| ||||||||| | || | || ||| Sbjct 89 ATCTTGGCCTTGACATTCTCGATCGTATCCGATGGCTCGACCTCCAGAGTGATGGTCTTG 30 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCA 118737 || ||||| || || || || |||| || Sbjct 29 CCAGTCAGCGTCTTCACGAAGATCTCCA 2 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433720561463608