Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20punctulatus_20[genbank_20GCA_5F000956255.1_202015-03-19] 20,774 sequences; 146,157,495 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq3192 114 1e-20 seq5576 84.2 2e-11 seq5552 84.2 2e-11 >seq3192 Length=14073 Score = 114 bits (126), Expect = 1e-20 Identities = 147/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||||||||| || ||||||||| |||||||||||| ||| ||| |||| ||| Sbjct 209 ACCAAGTGCAAGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGTCCGTCCTCC 150 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || |||||||| |||| ||||| || || ||||| | |||||||||||| Sbjct 149 AGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGAGGGATTCCCTCCTTGTCCTGG 90 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | | ||| ||| ||||||| || || |||||| Sbjct 89 ATCTTGGCCTTGACATTCTCGATCGTATCCGATGGCTCGACCTCCAGAGTGATGGTCTTG 30 Query 45308 CCCGTCAGAGTCTTCACAAAGAT 45330 || ||||| |||||||| ||||| Sbjct 29 CCAGTCAGCGTCTTCACGAAGAT 7 >seq5576 Length=36905 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| ||| || ||| ||||||||| || |||||||| ||| || | || ||| Sbjct 18768 ACCAGGTGAAGAGTGGACTCCTTCTGGATATTGTAGTCCGACAGGGTACGGCCATCTTCC 18709 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || ||||||||||| |||| ||||| || || ||||| | || ||||| ||| | Sbjct 18708 AGCTGCTTTCCGGCGAAGATCAGACGCTGCTGATCCGGAGGGATGCCTTCCTTATCCTGA 18649 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | ||||| ||| ||||| | || || |||||| Sbjct 18648 ATCTTGGCCTTCACATTTTCGATCGTGTCCGAGGGCTCGACCTCAAGAGTGATGGTCTTG 18589 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || || || || ||||| || || ||||| Sbjct 18588 CCGGTGAGTGTTTTCACGAAAATCTGCAT 18560 >seq5552 Length=12584 Score = 84.2 bits (92), Expect = 2e-11 Identities = 91/121 (75%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 13532 GGAAGATTCGAAACTGTGCAAGATATGCTACGTAGAAGAGTGCATCGTGTGCTTCGTACC 13591 ||| ||| |||||||||||| |||||||||||| | || || | |||||||| Sbjct 3237 GGAGGATGCGAAACTGTGCAGGATATGCTACGTTAACCCGTACAACACCACATTCGTACC 3178 Query 13592 GTGCGGTCACGTGGTGGCGTGTGCCAAGTGTGCGTTGAGTGTAGATAAGTGTCCGATGTG 13651 |||||| |||||||| || ||||||||||| || | | || ||| |||||| |||| Sbjct 3177 GTGCGGACACGTGGTAGCCTGTGCCAAGTGCGCCTCGGCGGTGGATCGGTGTCCACTGTG 3118 Query 13652 T 13652 | Sbjct 3117 T 3117 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 394975173626254