Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20punctulatus_20[genbank_20GCA_5F000956255.1_202015-03-19] 20,774 sequences; 146,157,495 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq3577 874 0.0 seq17361 347 1e-90 seq5408 98.7 9e-16 seq5576 93.3 4e-14 seq4173 93.3 4e-14 seq3192 84.2 2e-11 >seq3577 Length=7701 Score = 874 bits (968), Expect = 0.0 Identities = 1364/1944 (70%), Gaps = 23/1944 (1%) Strand=Plus/Plus Query 22103 GTCTTGTCCACTGTAAACTGTATGGCGTTTGCGGCCGGTTTGGTGCGAAGATAATACATG 22162 || ||||| || || ||||| || || ||| ||||||| || ||||| | ||| |||||| Sbjct 5699 GTTTTGTCGACCGTGAACTGGATCGCATTTACGGCCGGCTTCGTGCGCAAATAGTACATG 5758 Query 22163 CCCGTCTTCAGACCCATCTTCCACGCGTAAAAATGTATCGACGTCAATTTTCCATAACTC 22222 || ||||||| ||||||||||||||||| ||| || ||||| || | ||| || || | Sbjct 5759 CCAGTCTTCAAACCCATCTTCCACGCGTGAAAGTGGATCGAGGTAAGTTTACCGTAGTTG 5818 Query 22223 GGCAAGTCCATGTACACATTGAACGACTGACTCTGATCGATAAACGCTCCTCGATCGGCG 22282 || | ||| || | |||||||| || ||| ||||| |||||||| |||||||| Sbjct 5819 GGTTCGGCCACGTGTATGTTGAACGATTGGGACTGGTCGATGAACGCTCCACGATCGGCC 5878 Query 22283 GCCATATTTATCAATGTACGCATCGACATTTCCCATACGGTCTTGTACAGTTGCCTGATC 22342 ||||| | || | || | ||| || ||||| || || |||||||| | | | Sbjct 5879 GCCATTTGGATGCACGTTTTGACCGAAATCTCCCAAACCGTTTTGTACAGATCGCGCACG 5938 Query 22343 TCTAACGGTATCGATTCGATCCTCTGGACGGACCCGTTATTGTGTATGATCAAATTTTTA 22402 || ||||| || ||| |||||| || ||||| | | ||| || || Sbjct 5939 TCCTTTGGTATTTTCTCAATCTTCTGGATCGATCCGTTGTGCGCCAGGATTGTGTTCTTC 5998 Query 22403 ATCGTATCGTTCCACAAACCGATGGCGGTCAAATCTTTGACCAGATGACGGTTCACCACT 22462 || ||||| ||||| ||| ||||||| || |||| ||||||| ||||||| || Sbjct 5999 ATTTCATCGTCCCACAGCCCGTGCGCGGTCAGGTCCTTGATCAGATGATGGTTCACAACC 6058 Query 22463 TGAAACTCGCCGGACAAGACGCGGCGTTGGTAAATGTTGGATGTGAACGGTTCGAAAGAT 22522 ||||||||||| || | || || || | ||| | ||| || ||| |||| |||||||| Sbjct 6059 TGAAACTCGCCCGAAAGCACTCGTCGGTTGTAGACGTTCGACGTGTACGGCTCGAAAGAC 6118 Query 22523 TCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCCAACAGTAGCGAG 22582 || ||||| |||| ||| ||||| |||||||| || |||||||| || | ||| || ||| Sbjct 6119 TCGTTGTTGCCCAATATTTGAGCAGTCGAAGCTGTTGGCATCGGTGCTAGCAGCAGTGAG 6178 Query 22583 TTTCTCAAGCCGTGCTTTGAAATTTTACTCTTGAGCATCGACCAGTCCCACAGATCGGAC 22642 || | | || || |||| || || ||| | || ||| | |||||| || | Sbjct 6179 TTACGAATCCCATGTTTTGCGATCTTTTCCTTCAATGCCGCCCAATTCCACAGGTC---C 6235 Query 22643 GGCGTCACATTGTCCCACATATCGTATTGCAACACGCCGCGACTCGCCGGGCTGCCTTCG 22702 | || | |||| |||||| ||||| |||| | ||| || |||| | |||||| Sbjct 6236 GTCGGTTCCTTGTTCCACATGTCGTACTGCAGAATGCCCTTGCTTACCGGACAACCTTCG 6295 Query 22703 TACGTTTCGTACGGACCATATATCGCGGCAAGTTCGCAGCTCGCCTCCAACGCGCCGTAA 22762 ||||| |||||||| |||| | ||||| | ||||||||| || |||||||| || || Sbjct 6296 TACGTCTCGTACGGCCCATCCTTGGCGGCCAATTCGCAGCTAGCTTCCAACGCCCCATAG 6355 Query 22763 TATATAGTCTCGAAGATTTTCTTGTTCA-ATTCGGCGGCGGCGACGCTTTCGTACGGCAT 22821 || || || || || |||| || || | || ||| || | || |||||||| | Sbjct 6356 TAGATGGTTTCAAATATTTGCTGATTGAGCTTTTGCGCTTGC-TCACTCTCGTACGGAAA 6414 Query 22822 ACGCATCATCACGAACGCGTCCGCCATACCCTGAACGCCTATACCGATCGGTCGGTTTTT 22881 | ||||| | |||||| || ||||||||||| || || || |||||||| |||| Sbjct 6415 GCCCATCAAAATGAACGCATCGGCCATACCCTGGACACCGATGCCGATCGGACGGTGGCG 6474 Query 22882 CAGATTCGACACTTTTGCCTCGGGCAAAGGATACCAATTCGAATCGATTGTTCTGTTCAA 22941 || ||||| ||| || || |||| || || | ||| || || | |||| | Sbjct 6475 CATGTTCGAGCGTTTCGCTTCCGGCACCGGGTAGTAGTTCACGTCAATGATCTTGTTAAG 6534 Query 22942 GTTTCTGGTCACAATTTTCGTTATNNNNNNNNNNNNNTCAAAGTCGTAAACGCCCGATTG 23001 || | || || || || | | | || |||| ||| |||| | Sbjct 6535 ATTGCGCGTTACGATCTTGGCGACCTCCTTCAGCTTCTTGAAATCGT--ACGTACGATCG 6592 Query 23002 TAC--AACAAACTTGTTGACGGCGATCGAGGCAAGATTGCATACGGCCACCTCGTCTTTG 23059 | |||||| |||| | || |||||||| | |||||| |||||||| ||||| || Sbjct 6593 GGCTGGACAAACATGTTCAACGCAATCGAGGCCAAATTGCACACGGCCACTTCGTCCTTC 6652 Query 23060 GACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTGCCCAAATTGCTC 23119 |||| |||||| || || || || || || || |||||| || ||||| | || | Sbjct 6653 GACGAGTACTCCACTATCTCAGTGCAAAGGTTCGAACACTTGATGGTGCCGATGTTTTGC 6712 Query 23120 TGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACC 23179 ||||||||||| |||||||||| ||||||||| ||||||||||| |||||| || ||| Sbjct 6713 TGGTTGCTTTTGCGATTGCACGCATCCTTGTACAGCATGTACGGTACGCCCGTTTCCACC 6772 Query 23180 TGCGACTCGATGATCGCTCGCCACATAGTCTGAGCGTGAACACGTCGCACGTACCTGCCT 23239 || |||||||||||||| ||||| | || || | || | || | ||| | Sbjct 6773 TGTGACTCGATGATCGCAAACCACAGATCTTGCGCCTTCACTTGACGTATAAACCGACAC 6832 Query 23240 TCTTCCTCGTACTTTTGGTACAACGCGTCAAATTCGGCACCGTAACAGTCGGCCAGGCCG 23299 ||| ||||||| ||||| | || || || | || | | ||||||| ||| Sbjct 6833 TCTGCCTCGTAACCCGTGTACAGCTTCTCGAACTCTTCGCCCCACGAATCGGCCAATCCG 6892 Query 23300 GGCGATTGCATCGGACACATGAGACTCCACATTGAGTCATT---TTCAACGCGTCTCATA 23356 || | | ||| ||||| | |||||||||| ||||| || || || |||| Sbjct 6893 GGACAGTCGTGCGGGCACATCAAACTCCACATT---TCATTCGCCTCCACACGCTTCATG 6949 Query 23357 AAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCG 23416 || |||||||||||||| ||||||||||||| ||||| ||||| |||||||| |||||| Sbjct 6950 AACAGATCCGGTATCCAGAGAGCGTAGAACATGTCGCGAGCGCGAACCTCCTCCTTGCCG 7009 Query 23417 GTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCACGGCTCGAGGTAAACG 23476 ||||| || |||| ||||| ||| || ||||| || | |||||||| |||||||| | Sbjct 7010 GTGTTTTTCTTCAGATCCAGAAACTCAAACACATCACCGTGCCACGGTTCGAGGTAGATA 7069 Query 23477 GCAAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTAC 23536 ||||||||||| || | |||||| ||||||||||| ||||| || ||||||||||||||| Sbjct 7070 GCAAACGCGCCTGGCCGCTTATTACCGCCCTGATCAACGTACCGTGCCGTGTTGTTGTAC 7129 Query 23537 ACTCTTAGCATCGGCACGAGACCGTTGGACGCGCCG--CCTACGCCCGCCACACTCGAAC 23594 || | ||||||||| || | ||||| || ||| | || || | | || | Sbjct 7130 ACACGTAGCATCGGTACCAACCCGTTCGAAATACCGTTCGTA--CCGGAGATGTACGTTC 7187 Query 23595 CTTTTGCTCGAACGTTGTGAACGTGGAAACCTATGCCTCCGCCCGATTTCGATATCATCG 23654 | || || || | | ||| || | | || || || ||| ||||||| || |||| | Sbjct 7188 CCTTCGCACGGATGCAGTGCACATTCAGCCCGATACCACCGGCCGATTTGGAGATCAATG 7247 Query 23655 CGCATTGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTCCTCTTTGGTCGCGACCAAGA 23714 |||| || |||| || |||||||| || |||||||| || || ||| | || | Sbjct 7248 CGCACTGCTTCAATGTATCGTAGATACCGTCGATGCTATCGTCCGACATCGTCAGCAGAA 7307 Query 23715 AACACGAAGACATTTGCG--CTTTGGGCGTAGCGGCCGAGAACAGTGTCGGGCTGGCGTG 23772 | || || || | || | | ||| || || |||| |||| ||||| |||||| Sbjct 7308 AGCAAGACGAAAGCTGAGGACGCTGG--GTGGCCGCCGCAAACATGGTCGGAGAGGCGTG 7365 Query 23773 CGTAAAGTATCCATTCGACATTAGATTGTACGTGTCGATGGCGGCATCAATGTCCTCTCC 23832 |||||||| | | ||| | ||||||||||| ||||| || || ||||||||||| || Sbjct 7366 GGTAAAGTAACGCTCCGAAAGCAGATTGTACGTCTCGATCGCTGCCTCAATGTCCTCGCC 7425 Query 23833 GTGTATACCGATGGCGACGCGCATCATCATGTATTGAGGTCTCTCGACCGTGACGCCGTT 23892 ||| || ||||||||||| ||||||| ||| | || || ||||| || | || || Sbjct 7426 GTGGATGCCGATGGCGACACGCATCAACATATGCTGCGGCCTCTCCACAATCTTTCCCTT 7485 Query 23893 AATTTTGAACAGATATGAACGTTGCATCGTTTTAAATCCAAAATAGTCATAGTTAAAGTC 23952 || || |||| ||| || || | || ||||||||| || ||||||| ||| |||||| Sbjct 7486 TATCTTCAACAAATACGATCGCTCCAGCGTTTTAAAACCGAAATAGTTATACCCAAAGTC 7545 Query 23953 ACGATCGTGCACTATGGCCGAATTCAAACGGTACGCATTGGCAGCGATGATGTTGTAATG 24012 |||||||| | ||||||||||| | ||| | ||| || || ||| | ||||| || Sbjct 7546 ACGATCGTAAATGATGGCCGAATTTAGACGATCCGCGTTTGCCATGATCACCTTGTAGTG 7605 Query 24013 AAAATTCGATATCATCGGCGTTTT 24036 ||||| ||| ||||| || | ||| Sbjct 7606 AAAATCCGAAATCATGGGAGATTT 7629 >seq17361 Length=8649 Score = 347 bits (384), Expect = 1e-90 Identities = 504/705 (71%), Gaps = 10/705 (1%) Strand=Plus/Minus Query 57589 AGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCTGTCTAAGGATCTGAGCGATT 57648 |||| ||||| || || ||||| || ||||| || |||||||| ||||| ||| || | Sbjct 1237 AGGCGGAAGCTTCCTTCTGGACAGTGGAAGAGGTGGACCTGTCGAAGGACATGAAAGACT 1178 Query 57649 GGGATTCCCTCAAAGAATCTGAGAGAAATTTTATTAAACACGTGTTGGCGTTTTTCGCCG 57708 |||| || |||||| ||| | | || || ||||| | || || ||||||| Sbjct 1177 GGGAATCGCTCAAACCGAGCGAGCGTCACTTCATCTCGCACGTACTTGCCTTCTTCGCCG 1118 Query 57709 CATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGATTTTCACAAGAAGTGCAAGTGA 57768 | || || ||||| || ||||||||| |||| || | || || || ||||| |||| Sbjct 1117 CCTCGGACGGTATCGTAAACGAGAATCTGGTGGAGCGCTTCAGCCAGGAGGTGCAGGTGA 1058 Query 57769 CGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCATTGAAAACGTGCATTCAGAAATGT 57828 ||||||| | ||||| ||||| ||||| | || || || |||||||| ||||||| Sbjct 1057 CGGAGGCCCGCTGCTTCTACGGGTTTCAGATTGCGATGGAGAACGTGCACAGTGAAATGT 998 Query 57829 ATTCGCTACTCATCGATACGTACGTGAAGGAC---AACGA-CGAGAAACGTAGACTGTTC 57884 | ||||| || ||||| |||||| | ||| ||||| || || ||| |||||| Sbjct 997 ACTCGCTGCTGATCGACACGTACATACGCGACCCGAACGAGCGGGA---GTAT-CTGTTC 942 Query 57885 AACGCGATCGAAACAATGCCC-GCGATCGCCAAGAAGGCAGAGTGGTCAATCAAATGGAT 57943 |||||||||||||| | || ||| || |||||||| || ||| | | || ||||| Sbjct 941 AACGCGATCGAAACGCTACCGTGCG-TCAAGAAGAAGGCCGACTGGGCGCTGAACTGGAT 883 Query 57944 AAAAAGCGCCACGGCCACGTTCGCCGAGAGGCTAATCGCGTTCGCCGCCGTCGAAGGTAT 58003 ||| | ||||| |||| ||| | | | || ||||| ||||| || || || Sbjct 882 CTCCAGCAAGAAGGCCAACTTCGGGGAGCGTGTGGTTGCCTTCGCTGCCGTTGAGGGCAT 823 Query 58004 ATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGATGAAGAAACGCGGCCTGATGCCCGG 58063 ||||| |||||||||||||| || || ||| ||||||| |||||||| ||||| || Sbjct 822 TTTCTTCAGTGGCAGCTTTGCGGCTATCTTCTGGCTGAAGAAGCGCGGCCTAATGCCGGG 763 Query 58064 CCTGACGTTTAGCAACGAGTTGATATCGCGCGACGAGGGTCTCCATACTGATTTTGCGTG 58123 |||||||| ||||||| |||| |||||||||||||| || || ||| ||||| || Sbjct 762 GCTGACGTTCTCCAACGAGCTGATCTCGCGCGACGAGGGACTGCACTGTGACTTTGCCTG 703 Query 58124 CCTAATGTACTCTCACATTGTCAATAAACCGACGCGGGATCGCATCTTGGACATTATCAC 58183 ||| |||| | | | || | |||||| | ||| ||| | ||| || ||| Sbjct 702 CCTGATGTTCCGGTATCTGGTGCAGAAACCGTCTAAGGAGCGCGTGACGGAGATCATCCG 643 Query 58184 CGAGGCGGTCGCGATCGAAAATGAGTTTGTCACCGAAGCCCTACCGGTGGCCATGCTCGG 58243 ||| ||||||| |||||| | ||||| ||||| | || || ||||| | ||||||||| Sbjct 642 CGATGCGGTCGTGATCGAGCAGGAGTTCCTCACCAAGGCGCTGCCGGTCGACATGCTCGG 583 Query 58244 TATGAACAATGATTTGATGTCAAAGTACATTGAGTTTGTTGCCGA 58288 |||||| || ||||||| ||||||| ||||| || || || Sbjct 582 CATGAACTGCGAACTGATGTCGCAGTACATCGAGTTCGTCGCGGA 538 >seq5408 Length=43822 Score = 98.7 bits (108), Expect = 9e-16 Identities = 167/242 (69%), Gaps = 4/242 (2%) Strand=Plus/Minus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| || ||||| || || || || || || || || ||| | || || || || Sbjct 37146 AAGATGCAGATCTTCGTCAAAACCCTCACGGGTAAGACCATTACCCTTGAGGTCGAGCCC 37087 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 || || | |||| | || || || || ||||||||| || | ||||| || Sbjct 37086 TCGGATACGATCGAGAATGTGAAGGCGAAGATCCAGGACAAGGAGGGTATCCCGCCGGAT 37027 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTAT 31369 ||||||||||| || ||||| ||||| ||| |||| || || || |||||| Sbjct 37026 CAGCAGCGTCTCATCTTCGCCGGCAAGCAGCTGGAGGATGGCCGCACGCTGTCCGATTAC 36967 Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT----AGAAG 31425 || || || || || ||||| ||||||||||| ||| | ||| | || ||| ||||| Sbjct 36966 AATATCCAGAAGGAGTCGACCCTTCATCTGGTGCTTCGCCTGCGCGGTGGTGCCAAGAAG 36907 Query 31426 CG 31427 || Sbjct 36906 CG 36905 >seq5576 Length=36905 Score = 93.3 bits (102), Expect = 4e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| |||||||| || || || || ||||| || ||||| | || || || || || Sbjct 18560 ATGCAGATTTTCGTGAAAACACTCACCGGCAAGACCATCACTCTTGAGGTCGAGCCCTCG 18619 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||||| || || | || ||| ||||||||| | || || || ||| Sbjct 18620 GACACGATCGAAAATGTGAAGGCCAAGATTCAGGATAAGGAAGGCATCCCTCCGGATCAG 18679 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 |||||||| || ||||| || || ||| ||||||| || || || || || Sbjct 18680 CAGCGTCTGATCTTCGCCGGAAAGCAGCTGGAAGATGGCCGTACCCTGTCGGACTACAAT 18739 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 || || || || || |||||||| ||||| || |||| | || |||| Sbjct 18740 ATCCAGAAGGAGTCCACTCTTCACCTGGTGCTCCGACTCCGTGGTGGTA 18788 >seq4173 Length=11039 Score = 93.3 bits (102), Expect = 4e-14 Identities = 168/241 (70%), Gaps = 6/241 (2%) Strand=Plus/Plus Query 31184 GAATCAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTT 31243 ||| ||| |||||| ||||| || || ||||| || || |||||||| ||| |||| || Sbjct 8260 GAAGCAATCATGCAGATTTTTGTGAAAACTCTAACCGGGAAAACGATTACCCTCGATGT- 8318 Query 31244 GAACCGTCCG---ACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTG 31300 || | | || || ||| | | || ||||| | ||||| ||| ||||| | Sbjct 8319 GATCGGGTCGCAAACGGTG-CTAGACA-TCAAAAGCAAAATAGAGGAACGCGAAGGAATA 8376 Query 31301 CCGCCCGACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATG 31360 |||||||||| |||||| | || || |||||||| ||| || | || | | ||| Sbjct 8377 GCGCCCGACCAACAGCGTATCATCTTTGCTGGCAAGCAGCTGAACGATGATCGAATTATC 8436 Query 31361 AGCGATTATAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT 31420 ||||||||||| || | | |||||| | |||||||| || || ||| ||| ||| Sbjct 8437 TCAGATTATAACATCCAGCATGGATCGACGATGCATCTGGTGCTGCGATTGAAGGGAGGT 8496 Query 31421 A 31421 | Sbjct 8497 A 8497 >seq3192 Length=14073 Score = 84.2 bits (92), Expect = 2e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 31199 ATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCGACAGT 31258 || ||||| ||||| ||||| ||||| || ||||| | || || || || || || | Sbjct 7 ATCTTCGTGAAGACGCTGACTGGCAAGACCATCACTCTGGAGGTCGAGCCATCGGATACG 66 Query 31259 GTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGT 31318 |||| | ||||| | || ||||||||| || | || || || ||||||||| Sbjct 67 ATCGAGAATGTCAAGGCCAAGATCCAGGACAAGGAGGGAATCCCTCCAGATCAGCAGCGT 126 Query 31319 CTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAACATTCAA 31378 || || ||||| ||||| ||| |||| ||| ||| || ||| || ||||| || Sbjct 127 CTGATCTTCGCCGGCAAGCAGCTGGAGGACGGACGCACTCTGTCCGACTACAACATCCAG 186 Query 31379 AAAGAATCGAC 31389 || || ||||| Sbjct 187 AAGGAGTCGAC 197 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445650645610080