Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20punctulatus_20[genbank_20GCA_5F000956255.1_202015-03-19] 20,774 sequences; 146,157,495 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq4838 123 5e-23 seq17361 86.0 1e-11 >seq4838 Length=6282 Score = 123 bits (136), Expect = 5e-23 Identities = 227/330 (69%), Gaps = 2/330 (1%) Strand=Plus/Minus Query 35396 GGAGATTTGGGACCCGTATACGGATTCCAATGGCGTCATTTTGGTGCTGAATATGATACC 35455 || |||||||| || || ||||| || |||||||| || ||||| || |||| | || Sbjct 811 GGTGATTTGGGGCCTGTGTACGGTTTTCAATGGCGACACTTTGGGGCAAAATACAAAACG 752 Query 35456 TGTTCTTCCGATTATACTGGAAAGGGTATTGATCAATTGGCCAATATACTAAAGACCCTG 35515 || | |||||| ||||| | || || || ||| | || | || | | | | Sbjct 751 TGCCATGACGATTACACTGGGCAAGGCATAGACCAACTTGCAGAGGTAATCGACAAGATT 692 Query 35516 AGAGAAAATCCAGATGATAGAAGGATGATTATGACGGCATGGAATCCTATGGATCTTCAC 35575 | | | || || | ||| | | || || |||| || |||||||| | ||| | | | Sbjct 691 AAAAACAACCCGTACGATCGTCGAATCATCATGAGCGCCTGGAATCCGACCGATATCCCC 632 Query 35576 CTTATGGCTCTTCCTCCATGCCACATGACT-GCTCAATTTTATGTGGCTAATGGAGAATT 35634 |||||||||||| || || || || | |||||||||| ||| | ||| |||||||| Sbjct 631 AATATGGCTCTTCCACCTTGTCA-TTGCTTGGCTCAATTTTTTGTTGATAACGGAGAATT 573 Query 35635 GTCGTGCCAGTTGTATCAGCGAAGCGGAGATGTCGGGTTGGGCGTGCCCTTCAATATTGC 35694 || |||||| ||||||| ||| | || || || ||||| || || ||||| || || Sbjct 572 ATCATGCCAGATGTATCAACGATCGGCCGACGTGGGCTTGGGTGTACCATTCAACATCGC 513 Query 35695 ATCATACTCTCTTCTGACTCATCTGATGGC 35724 | ||||| || || || ||| |||| || Sbjct 512 AAGCTACTCGCTGCTTACCCATATGATCGC 483 >seq17361 Length=8649 Score = 86.0 bits (94), Expect = 1e-11 Identities = 153/223 (69%), Gaps = 3/223 (1%) Strand=Plus/Minus Query 101853 TCAAGAAGAAGGAGCAGTGGGCTATTAATTGGATGCAAAGCAATAA---CGATTTGGCGG 101909 |||||||||||| | ||||| | || ||||| ||||| || | | || | || Sbjct 916 TCAAGAAGAAGGCCGACTGGGCGCTGAACTGGATCTCCAGCAAGAAGGCCAACTTCGGGG 857 Query 101910 AACTAATTGTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCA 101969 | | | |||||||| ||||| ||||| || || ||||| ||||| || || | | Sbjct 856 AGCGTGTGGTTGCCTTCGCTGCCGTTGAGGGCATTTTCTTCAGTGGCAGCTTTGCGGCTA 797 Query 101970 TTTTCTGGATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTT 102029 | |||||| | ||||| | || | |||| || || || | |||||| ||| | || | Sbjct 796 TCTTCTGGCTGAAGAAGCGCGGCCTAATGCCGGGGCTGACGTTCTCCAACGAGCTGATCT 737 Query 102030 CTAGGGACGAAGGTCTTCATCGCGACTTTGCATGCATGCTGTT 102072 | | ||||| || || || | |||||||| ||| || |||| Sbjct 736 CGCGCGACGAGGGACTGCACTGTGACTTTGCCTGCCTGATGTT 694 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989320605519170