Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20punctulatus_20[genbank_20GCA_5F000956255.1_202015-03-19] 20,774 sequences; 146,157,495 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq5576 134 3e-26 seq19071 109 1e-18 seq8981 98.7 2e-15 >seq5576 Length=36905 Score = 134 bits (148), Expect = 3e-26 Identities = 148/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || ||||| ||||| ||||| || || || | || ||||| || || ||||| Sbjct 18756 GTGGACTCCTTCTGGATATTGTAGTCCGACAGGGTACGGCCATCTTCCAGCTGCTTTCCG 18697 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || || || | ||| ||||| ||||| || ||||| |||||||||||||| || || Sbjct 18696 GCGAAGATCAGACGCTGCTGATCCGGAGGGATGCCTTCCTTATCCTGAATCTTGGCCTTC 18637 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 |||||||| | || || || || ||||| || || || ||||| || || |||||| Sbjct 18636 ACATTTTCGATCGTGTCCGAGGGCTCGACCTCAAGAGTGATGGTCTTGCCGGTGAGTGTT 18577 Query 104543 TTTACAAATATCTGCAT 104559 || || || |||||||| Sbjct 18576 TTCACGAAAATCTGCAT 18560 >seq19071 Length=21458 Score = 109 bits (120), Expect = 1e-18 Identities = 180/260 (69%), Gaps = 0/260 (0%) Strand=Plus/Minus Query 165095 ACCGATAAGGATGAATGGAATACTTGGAATAAAATACACGATCCTGTTTTACATATAGAG 165154 |||||| ||||||||||| | ||| | || | |||||| || ||||||||||| Sbjct 13509 ACCGATCAGGATGAATGGTCATCCTGGCAGAAGCGAGGCGATCCGGTCCTACATATAGAG 13450 Query 165155 CTAAGAAGATGGGCAGATATGATGTTGATAGCACCCTTAACAGCAAACAGTTTAGCGAAG 165214 || | | |||||| || || | ||||||| || | ||||||||| | |||||| Sbjct 13449 CTCGGCAAATGGGCCGACCTGCTCGTGATAGCCCCGCTCGATGCAAACAGTCTGGCGAAG 13390 Query 165215 ATAGCTAACGGTATCTGTAATAACTTGTTAACGTGTATAGTTAGAGCGTGGAATATTAAT 165274 || || ||||| | || |||| ||| | ||||| | || ||| || Sbjct 13389 ATGGCGAACGGGTTGTGCGATAATTTGCTGCTGTGTACGACCCGTGCCTGGGATCCAGCC 13330 Query 165275 AAACCTTTACTTTTCTGTCCAGCTATGAATACACTTATGTGGGAACATCCTATTACTGAG 165334 |||||| | || ||||||||||| ||||| || | |||||| | ||||| || || ||| Sbjct 13329 AAACCTCTGCTCTTCTGTCCAGCGATGAACACGCGCATGTGGCAGCATCCAATCACCGAG 13270 Query 165335 CAGCATATAGAAACTCTTAA 165354 | ||| || |||| ||||| Sbjct 13269 CGGCAGATCAAAACGCTTAA 13250 >seq8981 Length=25070 Score = 98.7 bits (108), Expect = 2e-15 Identities = 223/330 (68%), Gaps = 4/330 (1%) Strand=Plus/Minus Query 238558 AACAGCTCGAGAGAGCCGAAACTCACGATCCCCTATGGAATTCCGCCCAGATACAAATGG 238617 || |||| || | |||| | || |||||| || ||||| | |||||| | || | | Sbjct 6687 AAGAGCTGGAAACAGCCCACACGCACGATGATCTGTGGAACGCAGCCCAGCTGCAGCTAG 6628 Query 238618 TAAGACTAGGCAAA-ATGCATAGTTTCTTACGAATGTATTGGGCTAAAAAGATACTTGAA 238676 ||| | |||| || ||||| | ||| | || ||||| ||||| || || ||||| || Sbjct 6627 TAA-AGGAGGCCAAGATGCACGGGTTCCTGCGCATGTACTGGGCGAAGAAAATACTAGAG 6569 Query 238677 TGGACTAGATCTCCAAAGGAAGCTCTTAGATATAGT-ATTTATCTGAACGATAAATACGA 238735 ||||| | | | || ||||||| || || | | || |||||||||||| ||| Sbjct 6568 TGGACGAAAACGCCCGAGGAAGCGCTC-GAAACGGCCATCTATCTGAACGATCGCTACAG 6510 Query 238736 ACTCGACGGTACGGATCCTAACGGATACGTAGGTTGTATGTGGTCAATATGTGGATTACA 238795 || || || ||||| || |||||||| || || |||||||| || || | || Sbjct 6509 TCTGGATGGGCGCGATCCGAATGGATACGTCGGGTGCATGTGGTCGATCGCCGGCATCCA 6450 Query 238796 CGATAGGGCATGGTCTGAGAGACCTATATTTGGAAAAGTTAGATACATGAATTATGAAGG 238855 ||| || |||| ||| | || ||||| ||| || | |||||||| || || || Sbjct 6449 TGATCAGGGATGGAAGGAGCGGGACATTTTTGGCAAAATTCGCTACATGAACTACGACGG 6390 Query 238856 AACTAAGAAAAAATTTGATGTAAATGCTTT 238885 ||| ||| ||||| || || || || Sbjct 6389 CTGCAAGCGAAAGTTTGACGTGAACGCGTT 6360 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151091935885992