Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20punctulatus_20[genbank_20GCA_5F000956255.1_202015-03-19] 20,774 sequences; 146,157,495 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq5408 113 4e-20 seq5576 93.3 4e-14 >seq5408 Length=43822 Score = 113 bits (124), Expect = 4e-20 Identities = 164/232 (71%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 ||| ||||||| | | ||| | |||||| || |||||| || || |||||||| | Sbjct 36916 ACCACCGCGCAGGCGAAGCACCAGATGAAGGGTCGACTCCTTCTGGATATTGTAATCGGA 36975 Query 48559 CAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618 || || | |||||||||||||| ||| || | || | ||||||||||||| ||| Sbjct 36976 CAGCGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGATCCGGCGG 37035 Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGT 48678 | || ||||||||| || ||| ||| | | | | || ||||| | | ||| Sbjct 37036 GATACCCTCCTTGTCCTGGATCTTCGCCTTCACATTCTCGATCGTATCCGAGGGCTCGAC 37095 Query 48679 CTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCATCGTG 48730 ||| | || ||||| ||||| ||||| ||||| || || ||||||||| || Sbjct 37096 CTCAAGGGTAATGGTCTTACCCGTGAGGGTTTTGACGAAGATCTGCATCTTG 37147 >seq5576 Length=36905 Score = 93.3 bits (102), Expect = 4e-14 Identities = 144/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGC 48583 ||||| ||| |||||| || || ||||| || | || || | || ||||||||| Sbjct 18762 TGAAGAGTGGACTCCTTCTGGATATTGTAGTCCGACAGGGTACGGCCATCTTCCAGCTGC 18703 Query 48584 TTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTC 48643 || ||| || | || | ||||||||||||| || | | |||||| ||| ||| || Sbjct 18702 TTTCCGGCGAAGATCAGACGCTGCTGATCCGGAGGGATGCCTTCCTTATCCTGAATCTTG 18643 Query 48644 TGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTG 48703 ||| | | | || || || | | ||| ||| | || ||||| || |||||| Sbjct 18642 GCCTTCACATTTTCGATCGTGTCCGAGGGCTCGACCTCAAGAGTGATGGTCTTGCCGGTG 18583 Query 48704 AGAGTTTTCACAAAAATCTGCATCGT 48729 || |||||||| |||||||||||||| Sbjct 18582 AGTGTTTTCACGAAAATCTGCATCGT 18557 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421144546304774