Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20punctulatus_20[genbank_20GCA_5F000956255.1_202015-03-19] 20,774 sequences; 146,157,495 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq12349 176 3e-39 seq5408 102 5e-17 seq7220 98.7 7e-16 seq5576 96.9 2e-15 >seq12349 Length=7458 Score = 176 bits (194), Expect = 3e-39 Identities = 166/212 (78%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 6162 ATGGGGACCCTGAACGTAAATCGTAATGTGGCGGACGCGTTCTACCGCTACAAAATGCCG 6221 |||| |||| | ||||| || ||||| ||| | || |||||||| ||||| ||||| Sbjct 546 ATGGCGACCGTAAACGTGAACCGTAACGTGACCGATATCTTCTACCGGTACAAGATGCCT 487 Query 6222 CGCATCTGCGCCAAGGTCGAGGGTAAGGGAAACGGTATTAAAACCGTCATTGTCAACATG 6281 |||||| |||||||| |||||||| ||||||||||| || || || || || |||||| Sbjct 486 CGCATCAATGCCAAGGTAGAGGGTAAAGGAAACGGTATCAAGACGGTGATCGTGAACATG 427 Query 6282 CCTGAAGTCGCTAAGGCGCTCGGACGCCCTGCCACCTACCCGACGAAATATTTCGGGTGC 6341 | ||||| || ||| |||| || || || ||||||||||| || || ||||| ||| Sbjct 426 GCGGAAGTGGCCCGAGCGATCGGTCGTCCCGCTACCTACCCGACCAAGTACTTCGGTTGC 367 Query 6342 GAACTTGGCGCTCAGACGCAGTTTGATCACAA 6373 |||||||| || || ||||||||||| ||||| Sbjct 366 GAACTTGGGGCGCAAACGCAGTTTGACCACAA 335 >seq5408 Length=43822 Score = 102 bits (112), Expect = 5e-17 Identities = 161/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 38090 ACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGA 38149 |||||| | || || | ||||| |||||| || |||||| || ||||||||||| || Sbjct 36916 ACCACCGCGCAGGCGAAGCACCAGATGAAGGGTCGACTCCTTCTGGATATTGTAATCGGA 36975 Query 38150 CAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGG 38209 || || | || || | || || ||||| || || || || || ||||| | || Sbjct 36976 CAGCGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGATCCGGCGG 37035 Query 38210 GACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAAC 38269 || || || |||||| || || ||||||||||| || ||||| || || Sbjct 37036 GATACCCTCCTTGTCCTGGATCTTCGCCTTCACATTCTCGATCGTATCCGAGGGCTCGAC 37095 Query 38270 TTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 || | ||||| || |||||||| | |||||| ||||| |||||||| || Sbjct 37096 CTCAAGGGTAATGGTCTTACCCGTGAGGGTTTTGACGAAGATCTGCATCTT 37146 >seq7220 Length=9813 Score = 98.7 bits (108), Expect = 7e-16 Identities = 195/287 (68%), Gaps = 4/287 (1%) Strand=Plus/Minus Query 6375 AACGAGCGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGACTTACTTGAC 6434 ||||| |||||||| || || || |||| | | || ||||||||||| | || || Sbjct 9336 AACGAACGCTTCATTGTGAATGGTGCGCACGATGCCGCTAAGCTGCAGGATCTGCTGGAT 9277 Query 6435 GGCTTTATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGACCGAGCTTATT 6494 || || |||||| ||| || ||||| | ||| ||||| |||||||| || || || | Sbjct 9276 GGATTCATTCGCCGGTTCGTCCTGTGCCCGGAGTGCGACAACCCGGAAACGGATCTGCTG 9217 Query 6495 GTGTCTACCAAGAGAAACACCATCTCTCAGGGCTGCAAAGCGTGCGGTTACCATGGCAAG 6554 ||||| | |||| || || || ||||| ||||| || || || | ||| || | Sbjct 9216 GTGTCGTCAAAGAAGGGTACGATTTCGCAGGGATGCAAGGCTTGTGGCTTCCACGGTCCG 9157 Query 6555 CTGGATTTATCACACAAACTCAACACCTTCATACTGAAGAATCCTCC--ACCTAAAGACC 6612 || || | ||||| | ||||| ||||| | ||||| || || || | | ||| Sbjct 9156 CTCGAGGTGAACCACAAGGTGAACACGTTCATCATCAAGAACCCACCGAACGTGA--ACC 9099 Query 6613 CTAGCACGCAGGGTTCTTCGCAAAATAAGAGCAACCGTGGCAAGCGC 6659 | | |||||| |||||| | || |||| || |||||||| Sbjct 9098 CGGCGAGCCAGGGTGCTTCGCTGACCGAGGGCAAGCGCAGCAAGCGC 9052 >seq5576 Length=36905 Score = 96.9 bits (106), Expect = 2e-15 Identities = 165/238 (69%), Gaps = 1/238 (0%) Strand=Plus/Minus Query 38088 TTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCA 38147 |||||||| | | || | ||||| ||||||||| |||||| || |||||||| || Sbjct 18789 TTACCACCACGGAGTCGGAGCACCAGGTGAAGAGTGGACTCCTTCTGGATATTGTAGTCC 18730 Query 38148 GACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAG 38207 |||| ||| | || || | || |||||||| || || || || || ||||| | Sbjct 18729 GACAGGGTACGGCCATCTTCCAGCTGCTTTCCGGCGAAGATCAGACGCTGCTGATCCGGA 18670 Query 38208 GGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCA 38267 |||| |||||| || ||| ||| || ||||||||| | || || || || Sbjct 18669 GGGATGCCTTCCTTATCCTGAATCTTGGCCTTCACATTTTCGATCGTGTCCGAGGGCTCG 18610 Query 38268 ACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT-GTTTTAC 38324 || || | || || || || || || | ||||||||||| |||||||| ||| ||| Sbjct 18609 ACCTCAAGAGTGATGGTCTTGCCGGTGAGTGTTTTCACGAAAATCTGCATCGTTCTAC 18552 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334862397021194