Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20punctulatus_20[genbank_20GCA_5F000956255.1_202015-03-19] 20,774 sequences; 146,157,495 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq3577 219 4e-52 seq5408 123 2e-23 seq3192 93.3 4e-14 >seq3577 Length=7701 Score = 219 bits (242), Expect = 4e-52 Identities = 930/1444 (64%), Gaps = 40/1444 (3%) Strand=Plus/Plus Query 128809 GCCGGCTTGGTGCGCAAATAGTACATGCCTGTTTTCAAACCGCTTTTCCAAGTGTGCATG 128868 |||||||| |||||||||||||||||||| || |||||||| | ||||| | ||| | | Sbjct 5732 GCCGGCTTCGTGCGCAAATAGTACATGCCAGTCTTCAAACCCATCTTCCACGCGTGAAAG 5791 Query 128869 TGAATCGTGGTCAACAATGCGTAGGTGGGTTGACTCaaaaaaaTATTAAATGATTGACTT 128928 || |||| ||| | ||||| |||||| || || || || ||||| Sbjct 5792 TGGATCGAGGTAAGTTTACCGTAGTTGGGTTCGGCCACGTGTATGTTGAACGATTGGGAC 5851 Query 128929 TGATCAATAAAGGGGCCGCGATCGGCAGCCATACCAATCAAATTTTTCACTTTCATTTCC 128988 || || || || | || |||||||| ||||| || | |||| || || ||| Sbjct 5852 TGGTCGATGAACGCTCCACGATCGGCCGCCATTTGGATGCACGTTTTGACCGAAATCTCC 5911 Query 128989 CACACCGTTTTGTAAAGCTCTCTCACGTGTTTTGGTATTTCTTCAATGTTCTGCA-CGCT 129047 || ||||||||||| || || | ||||| |||||||||| ||||| ||||| | || | Sbjct 5912 CAAACCGTTTTGTACAGATCGCGCACGTCCTTTGGTATTTTCTCAATCTTCTGGATCGAT 5971 Query 129048 GCCGTTGTTTGCAATAATTTTGTTTCGCATCTGTTCGTTGTACAAATTCAGTTTGATCAA 129107 ||||||| || | ||| |||| ||| | |||| ||| | | ||| Sbjct 5972 -CCGTTGTGCGCCAGGATTGTGTTCTTCATTTCATCGTCCCACAGCCCGTGCGCGGTCAG 6030 Query 129108 ATCGTCGGTCAAGTATTTGTTTATTACTTGAAAGTCACCCGCCAAAACGCGCCGAACGTA 129167 || | | ||| | | ||| | || ||||| || |||| | || || || ||| Sbjct 6031 GTCCTTGATCAGATGATGGTTCACAACCTGAAACTCGCCCGAAAGCACTCGTCGGTTGTA 6090 Query 129168 AATGTTGTTGGTGAACGGCTCAAACGATTCATTGTTGCCTAATATTTGAGCCGTTGTCGC 129227 | ||| ||| ||||||| || || || |||||||| ||||||||||| || | || Sbjct 6091 GACGTTCGACGTGTACGGCTCGAAAGACTCGTTGTTGCCCAATATTTGAGCAGTCGAAGC 6150 Query 129228 GGTGGGCATGTAAGCCACGCA-AAGCGAGTTTCGCAAACCGTGCTGTTTAATGTCttttt 129286 || ||||| || | ||| || ||||| || | || || | | || | || | Sbjct 6151 TGTTGGCATCGGTGCTA-GCAGCAGTGAGTTACGAATCCCATGTTTTGCGATCTTTTCCT 6209 Query 129287 ttAATTGTGTCCAGTCCCACATCGATGTGGGTGTGTGATTCCACAAGTCGTATTGCAATA 129346 | ||| | ||| | ||||| || ||| | ||||||| |||||| |||| | Sbjct 6210 TCAATGCCGCCCAATTCCACAGGTCCGTCGGTTCCTTGTTCCACATGTCGTACTGCAGAA 6269 Query 129347 TACCCAAACTGGCGGGACTGGAAAAGTAGGAATCGTGCACGCCGTAAGCTT--TTGCCAA 129404 | ||| || | |||| ||| | |||| ||| | | ||| ||||| Sbjct 6270 TGCCCTTGCTTACCGGACAACCTTCGTACGTCTCGT--ACGGCCCATCCTTGGCGGCCAA 6327 Query 129405 TTCGCAACTCGCTTCCAATGCGCCAAAATAAATTGTTTCGGCAAT-TTTGGTG-TTCAAC 129462 |||||| || |||||||| || ||| | || || ||||| ||| |||| || || | | Sbjct 6328 TTCGCAGCTAGCTTCCAACGCCCCATAGTAGATGGTTTC--AAATATTTGCTGATTGAGC 6385 Query 129463 ACTTTGGCCTGGTCGCTTTCGTACGGCATACGCAACATGGCAAATGTGTCGGCCAAACCT 129522 || || || || || |||||||| | | || || || | ||||||| ||| Sbjct 6386 TTTTGCGCTTGCTCACTCTCGTACGGAAAGCCCATCAAAATGAACGCATCGGCCATACCC 6445 Query 129523 TGAATACCCACACCGATGGGTCGATGTTTTCTATTGGA---TTTTTGTGCCGACAACAAG 129579 || | ||| | ||||| || || || | || || ||| | ||| || | Sbjct 6446 TGGACACCGATGCCGATCGGACGGTGGCGCATGTTCGAGCGTTTCGCTTCCGGCACC--- 6502 Query 129580 GGATAGTAGTTGATGTCTATAATTTTGTTTAAATTCTTGACCACAATTTTCGTTACGTAT 129639 || |||||||| | ||| || || ||||| | ||| || || || | || | Sbjct 6503 GGGTAGTAGTTCACGTCAATGATCTTGTTAAGATTGCGCGTTACGATCTTGGCGACCTCC 6562 Query 129640 TTTAACATTTCAAAATTGTACTCGCCTAC-ATCGATGTCGACAAA-TTGATTGACACAAA 129697 || | | | | |||| ||| | ||| |||| | |||||| || | || | || Sbjct 6563 TTCAGCTTCTTGAAATCGTA----CGTACGATCGGGCTGGACAAACATGTTCAACGC-AA 6617 Query 129698 TCGAGGCCAAATTGCAGACGGCACTTTCGTTTTTGTCACTGTACTCGACAATTTCGGCGC 129757 |||||||||||||||| ||||| ||||| || |||||| || || || | || Sbjct 6618 TCGAGGCCAAATTGCACACGGCCACTTCGTCCTTCGACGAGTACTCCACTATCTCAGTGC 6677 Query 129758 ACAAATTACTATTTTTAATGGTGCCCAAATGCTTT--TGATTACTTTTCATGTTGCAAGC 129815 | | || | || |||||||| ||| ||| || || ||||| ||||| || Sbjct 6678 AAAGGTTCGAACACTTGATGGTGCC--GATGTTTTGCTGGTTGCTTTTGCGATTGCACGC 6735 Query 129816 ATCTTTGTACATCATGTACGGCGTGCCCGTTTCGACTTGCGTTTCGACAATGGTCCTGAA 129875 ||| ||||||| ||||||||| ||||||||| || || | |||| || | | Sbjct 6736 ATCCTTGTACAGCATGTACGGTACGCCCGTTTCCACCTGTGACTCGATGATCGCAAACCA 6795 Query 129876 CAAGTCTCGAGCCTTGATCTGTCTTACAAATTTGCCAC-ATTTCTCGTATGCCACATACA 129934 || ||| | ||||| | || | || ||| | ||| | |||||| || |||| Sbjct 6796 CAGATCTTGCGCCTTCACTTGACGTATAAA-CCGACACTCTGCCTCGTAACCCGTGTACA 6854 Query 129935 GTTGTTCAAATTCTGAGCCGTGTACGGTGTCGAGCAA---CGGCGATTCACGCGGACACA 129991 | | || || ||| ||| || | ||| ||| || | || |||| |||| Sbjct 6855 GCTTCTCGAACTCTTCGCC--CCAC-GAATCGGCCAATCCGGGACAGTCGTGCGGGCACA 6911 Query 129992 TCAAACTCCACATTCCATCCGCTTCGACTCGTTTCATAAACAAATCGGGTACCCACAGGG 130051 |||||||||||||| ||| ||| || || || ||||| |||| ||| |||| ||| || | Sbjct 6912 TCAAACTCCACATTTCATTCGCCTCCACACGCTTCATGAACAGATCCGGTATCCAGAGAG 6971 Query 130052 CGTACAACAAATCTCGCGCTTTTCTATCCTCGGCACCCATGTTACGTTTCAGTTCAAGGA 130111 |||| |||| || || || ||||| || |||| ||||| || || | Sbjct 6972 CGTAGAACATGTCGCGAGCGCGAACCTCCTCCTTGCCGGTGTTTTTCTTCAGATCCAGAA 7031 Query 130112 AATCGTAAATGTCGGCGTGCCACGGTTCAACATAAATTGCCATTGCGCCCTTCCG---TT 130168 | || | | || ||||||||||||| | || || || | ||||| ||| | Sbjct 7032 ACTCAAACACATCACCGTGCCACGGTTCGAGGTAGATAGCAAACGCGCCTGGCCGCTTAT 7091 Query 130169 TGCCCCCTTGGTCAACGTGGCGCACGGCATTGTTGTAGACTCGCAACATTGCCTCCAATC 130228 | || || || ||||||| || | | |||||||| || || | ||| | |||| | Sbjct 7092 TACCGCCCTGATCAACGTACCGTGCCGTGTTGTTGTACACACGTAGCATCGGTACCAACC 7151 Query 130229 CGTT 130232 |||| Sbjct 7152 CGTT 7155 >seq5408 Length=43822 Score = 123 bits (136), Expect = 2e-23 Identities = 166/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 |||||||| || || || ||||| | || ||||| || | || ||||| || || || Sbjct 37146 AAGATGCAGATCTTCGTCAAAACCCTCACGGGTAAGACCATTACCCTTGAGGTCGAGCCC 37087 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 | ||||| | || || | || || || || |||||||||||||| || || ||| Sbjct 37086 TCGGATACGATCGAGAATGTGAAGGCGAAGATCCAGGACAAGGAGGGTATCCCGCCGGAT 37027 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 || || ||||| || || |||||||| ||| | |||||| |||||| | ||||||||| Sbjct 37026 CAGCAGCGTCTCATCTTCGCCGGCAAGCAGCTGGAGGATGGCCGCACGCTGTCCGATTAC 36967 Query 22396 AACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || || || || || || ||| | ||| | || | || ||||||| ||| Sbjct 36966 AATATCCAGAAGGAGTCGACCCTTCATCTGGTGCTTCGCCTGCGCGGTGGT 36916 >seq3192 Length=14073 Score = 93.3 bits (102), Expect = 4e-14 Identities = 153/221 (69%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 22225 ATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACC 22284 || || || || || | || || || || ||||||| || || || | | ||||| Sbjct 7 ATCTTCGTGAAGACGCTGACTGGCAAGACCATCACTCTGGAGGTCGAGCCATCGGATACG 66 Query 22285 GTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGT 22344 | || || |||| || || || ||||||||||| || || || ||||| || ||| Sbjct 67 ATCGAGAATGTCAAGGCCAAGATCCAGGACAAGGAGGGAATCCCTCCAGATCAGCAGCGT 126 Query 22345 CTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAA 22404 || || || |||||||| ||| | ||||| ||||| | ||||| |||||||| || Sbjct 127 CTGATCTTCGCCGGCAAGCAGCTGGAGGACGGACGCACTCTGTCCGACTACAACATCCAG 186 Query 22405 AAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 || || || ||| | || || || | || ||||||| || Sbjct 187 AAGGAGTCGACCTTGCACTTGGTCCTCCGTCTGCGCGGTGG 227 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419621731953310