Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20punctulatus_20[genbank_20GCA_5F000956255.1_202015-03-19] 20,774 sequences; 146,157,495 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq15712 104 5e-17 seq19205 91.5 3e-13 seq19123 91.5 3e-13 seq18992 91.5 3e-13 seq18984 91.5 3e-13 seq18801 91.5 3e-13 seq18798 91.5 3e-13 seq15985 91.5 3e-13 seq18799 89.7 1e-12 seq15633 89.7 1e-12 seq136 89.7 1e-12 >seq15712 Length=12775 Score = 104 bits (114), Expect = 5e-17 Identities = 213/313 (68%), Gaps = 8/313 (3%) Strand=Plus/Minus Query 218565 GCGTTCTATTCCCAGCGTGGTGGATGGCCTCAAGCCATCGCAGCGTAAGATCCTCTTTGC 218624 ||| || || || || || |||| || || ||||| ||||| ||| | || ||| | Sbjct 3675 GCGCTCGATCCCGTGCATGCTGGACGGGCTGAAGCCGGGCCAGCGGAAGGTGCTGTTTAC 3616 Query 218625 CGCATTCAAGCGGAACCTGGTTCAAGAAATTAAGGTCGCTCAGTTTTCTGGTTATGTATC 218684 |||||||| ||| | || | ||||| || ||||| | |||| || | Sbjct 3615 GTGCTTCAAGCGTAACGACAAGCGCGAGGTGAAGGTGGCCCAGTTGGCGGGTTCGGTGGC 3556 Query 218685 CGAAATTTCTGGCTACCATCACGGTGAGCAGAG--TCTGCAGGGTGCCATTGTAGGCATG 218742 ||||| || | ||||||||||| |||||| ||||| | | || | | || Sbjct 3555 GGAAATGTCCGCTTACCATCACGGCGAGCAGTCGCTCTGCTCGACG--ATCATCAACCTG 3498 Query 218743 GCACAGGACTATGTGGGCAGTAACAACATGAACTTGCTGCTCCCCAACGGTCAGTTTGGT 218802 || ||| |||| || ||||| |||||||| ||| ||||| || ||||||||||||| Sbjct 3497 GCGCAGAACTACGTCGGCAGCAACAACATCAACCTGCTGTATCCGGGCGGTCAGTTTGGT 3438 Query 218803 TCTCGTCTATTGGGTGGAAAGGATAGTGCTTCTGCC--AGGTATATCTTTACAAAGTTGT 218860 | || | |||||| |||||||| || | ||| ||||| ||||| || | | ||| Sbjct 3437 ACGCGGTTGACGGGTGGCAAGGATAGCGC--CAGCCCTAGGTACATCTTCACGATGATGT 3380 Query 218861 CGCCCGTGACGCG 218873 || || ||||||| Sbjct 3379 CGGCCCTGACGCG 3367 Score = 84.2 bits (92), Expect = 4e-11 Identities = 94/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 217836 CTGCACTCTCATCCTGACAGAGGGAGACTCAGCTGCCACGCTGGCAACCGCTGGTCTTGC 217895 ||| || ||||||||||| ||||||||||| || ||| |||| | || || | Sbjct 4452 CTGTACGCTCATCCTGACCGAGGGAGACTCGGCCAAAACGTTGGCCGTGTCGGGGCTGGG 4393 Query 217896 CGTGGTGGGTCGTGAAAGGTATGGTATCTTCCCCCTCCGTGGTAAGCTGCTCAACGTGCG 217955 ||||| ||||| || | ||| ||| | || || || || ||||||||||| |||||||| Sbjct 4392 GGTGGTCGGTCGCGACACGTACGGTGTGTTTCCGCTGCGCGGTAAGCTGCTGAACGTGCG 4333 Query 217956 CGATGC 217961 ||| || Sbjct 4332 CGAAGC 4327 >seq19205 Length=6244 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 5062 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 5003 Query 142563 CCCCACATCGGGC 142575 |||||| | |||| Sbjct 5002 CCCCACGTTGGGC 4990 >seq19123 Length=4050 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 2433 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 2374 Query 142563 CCCCACATCGGGC 142575 |||||| | |||| Sbjct 2373 CCCCACGTTGGGC 2361 >seq18992 Length=5473 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 256 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 315 Query 142563 CCCCACATCGGGC 142575 |||||| | |||| Sbjct 316 CCCCACGTTGGGC 328 >seq18984 Length=2147 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 2086 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 2027 Query 142563 CCCCACATCGGGC 142575 |||||| | |||| Sbjct 2026 CCCCACGTTGGGC 2014 >seq18801 Length=4868 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 73 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 14 Query 142563 CCCCACATCGGGC 142575 |||||| | |||| Sbjct 13 CCCCACGTTGGGC 1 >seq18798 Length=5268 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 73 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 14 Query 142563 CCCCACATCGGGC 142575 |||||| | |||| Sbjct 13 CCCCACGTTGGGC 1 >seq15985 Length=39946 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 10909 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 10968 Query 142563 CCCCACATCGGGC 142575 |||||| | |||| Sbjct 10969 CCCCACGTTGGGC 10981 >seq18799 Length=10264 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 72 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 13 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 12 CCCACGTTGGGC 1 >seq15633 Length=23244 Score = 89.7 bits (98), Expect = 1e-12 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 142502 TAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGA 142561 |||||||| |||||||||||||||||| | ||||||||||| |||||||||||||| Sbjct 4718 TAGCCCGGCTAGCTCAGTCGGTAGAGCATGACACTCTTAATCTCAGGGTCGTGGGTTCGA 4777 Query 142562 GCCCCACATCGGGC 142575 ||||||| | |||| Sbjct 4778 GCCCCACGTTGGGC 4791 >seq136 Length=3622 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 2694 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 2753 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 2754 CCCACGTTGGGC 2765 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027563223890934