Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20punctulatus_20[genbank_20GCA_5F000956255.1_202015-03-19] 20,774 sequences; 146,157,495 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq1711 185 2e-41 seq5408 152 9e-32 seq5576 141 2e-28 seq4173 105 1e-17 >seq1711 Length=9628 Score = 185 bits (204), Expect = 2e-41 Identities = 320/465 (69%), Gaps = 0/465 (0%) Strand=Plus/Plus Query 268258 CCACATTGCTTCGACATAGTCCCGCGCATGGCCCCAATCGCGCTTTGCGTCCATGTTCCC 268317 ||||||||||||||| ||||| ||| |||||||| |||||||| | || | || || Sbjct 4293 CCACATTGCTTCGACGTAGTCTTTCGCGTGGCCCCAGTCGCGCTTCGAATCGAGATTACC 4352 Query 268318 GAGGAACAGGCATTTCTGCTTGCCGAGCTTCACGCGTGCAAGACCGCGAGTGATTTTTCG 268377 || | ||| | ||||| ||||||| | || | |||||||||||| || Sbjct 4353 CAGCTCGACGCACTCCTGCTGGCCGAGCGAAATCTTCGCCACCGAGCGAGTGATTTTGCG 4412 Query 268378 GGTCACGAACGTCTCGCCACGTAGAGGGCTCTCGTGGTTGAAGAGGATGCCGTTGCACGC 268437 ||||| || |||| || || | || |||||||||||||| || |||||||| || Sbjct 4413 TGTCACAAAGTTCTCACCCCGCCGGGGCGATTCGTGGTTGAAGAGAATACCGTTGCAGGC 4472 Query 268438 GAACATGCCATATGCCTCACGGTAGTTCACGACCGTCCAGTATGCAAACATCTTTGCAAC 268497 |||||| || || || || ||||| | || ||||||| | |||| || ||| Sbjct 4473 AAACATGTTGTACGCTTCGCGATAGTTGATCACTATCCAGTAGCCGTACATTTTCGCACA 4532 Query 268498 TGCGTACGGAGAACGTGGATGGAAGGGCGTCGTGATCTTTTGAGGGATTTCTCGGACTTT 268557 |||||||| || || |||| ||| || || | ||||| || |||| || || Sbjct 4533 CGCGTACGGTGAGCGCGGATAGAATGGAGTTTTTTCGTTTTGCGGCGTTTCGACCACCTT 4592 Query 268558 GCCAAAGAGCTCGGAGGTCGATGCTTGGTAGAACTTTGTTGTTTTTTCGAGACCGCAGAT 268617 |||| |||| ||||| || || || |||||||| || || || | || | | Sbjct 4593 GCCATAGAGTTCGGACGTGGACGCCTGGTAGAAGCGGACCGTCTTCTCCTGTCCAACGGT 4652 Query 268618 TCGGATTGCCTCGAGCAAACGAAGAGTTCCCATGCCATCCACGTCCGCTGTATACTCCGG 268677 ||||| || || |||| || || || || | ||||||| ||||||||||| || Sbjct 4653 ACGGATGGCATCAAGCAGCCGCAGCGTACCGACCGCATCCACTTCCGCTGTATATTCGCT 4712 Query 268678 CATCTCGAATGACACCTGGACATGGCTCTGGGCGCCCAGGTTATA 268722 || ||||| || | || |||||||| |||||| | ||||| || Sbjct 4713 CAGATCGAACGAAATCTTAACATGGCTTTGGGCGGCAAGGTTGTA 4757 >seq5408 Length=43822 Score = 152 bits (168), Expect = 9e-32 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || ||||| ||||| | |||| || || || ||||| || ||||| || |||||||| Sbjct 36917 CCACCGCGCAGGCGAAGCACCAGATGAAGGGTCGACTCCTTCTGGATATTGTAATCGGAC 36976 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || | |||||| |||||||| ||||| | || || || || || Sbjct 36977 AGCGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGATCCGGCGGG 37036 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || |||||||| || ||||| ||||| || |||||| || || | | || || Sbjct 37037 ATACCCTCCTTGTCCTGGATCTTCGCCTTCACATTCTCGATCGTATCCGAGGGCTCGACC 37096 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | ||| ||||| || ||||||||||| |||||||| |||||||| Sbjct 37097 TCAAGGGTAATGGTCTTACCCGTGAGGGTTTTGACGAAGATCTGCAT 37143 >seq5576 Length=36905 Score = 141 bits (156), Expect = 2e-28 Identities = 171/233 (73%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 68229 TAATTTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAA 68288 || || || || || || || | |||| ||| || |||||||| || ||||| || || Sbjct 18792 TACTTACCACCACGGAGTCGGAGCACCAGGTGAAGAGTGGACTCCTTCTGGATATTGTAG 18733 Query 68289 TCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCG 68348 || || || || | |||||||| | |||||| |||||||| || || | || || || Sbjct 18732 TCCGACAGGGTACGGCCATCTTCCAGCTGCTTTCCGGCGAAGATCAGACGCTGCTGATCC 18673 Query 68349 GGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGAT 68408 || || ||||||||||| || |||||||| ||||| || ||||| ||||| | | Sbjct 18672 GGAGGGATGCCTTCCTTATCCTGAATCTTGGCCTTCACATTTTCGATCGTGTCCGAGGGC 18613 Query 68409 TCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || || || | |||||||| || || ||||| || || ||||| |||||||| Sbjct 18612 TCGACCTCAAGAGTGATGGTCTTGCCGGTGAGTGTTTTCACGAAAATCTGCAT 18560 >seq4173 Length=11039 Score = 105 bits (116), Expect = 1e-17 Identities = 91/113 (81%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 68349 GGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGAT 68408 || || ||||||||||| || |||||||| ||||| ||| |||||||||||| | || Sbjct 11039 GGAGGGATGCCTTCCTTATCCTGAATCTTAGCCTTCACGTTCTCGATGGTGTCCGATGGC 10980 Query 68409 TCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || || |||| |||||||| ||||| || || ||||||||||| || ||||| Sbjct 10979 TCCACCTCCAGCGTGATGGTCTTTCCGGTCAGAGTCTTGACGAAGATTTGCAT 10927 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921383077703280