Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20punctulatus_20[genbank_20GCA_5F000956255.1_202015-03-19] 20,774 sequences; 146,157,495 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq17361 320 3e-82 seq3577 271 1e-67 >seq17361 Length=8649 Score = 320 bits (354), Expect = 3e-82 Identities = 437/606 (72%), Gaps = 7/606 (1%) Strand=Plus/Minus Query 42418 ACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGT 42477 || |||| ||||||||||||||||| ||||| || || || ||||| |||| | | Sbjct 1138 ACGTACTTGCCTTCTTCGCCGCCTCGGACGGTATCGTAAACGAGAATCTGGTGGAGCGCT 1079 Query 42478 TCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAG 42537 ||| | ||||||||| ||||| |||||||||||||| || ||||| || || | Sbjct 1078 TCAGCCAGGAGGTGCAGGTGACGGAGGCCCGCTGCTTCTACGGGTTTCAGATTGCGATGG 1019 Query 42538 AGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCGTCG 42597 ||||||||||| ||| ||||| | ||| || |||||||||| | || || || Sbjct 1018 AGAACGTGCACAGTGAAATGTACTCGCTGCTGATCGACACGTACATACGCGACCCGAACG 959 Query 42598 AGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACT 42657 |||| | |||||||| || || || ||| | || ||| ||||||||||||| |||| Sbjct 958 AGCGGGAGTATCTGTTCAACGCGATCGAAACGCTACCGTGCGTCAAGAAGAAGGCCGACT 899 Query 42658 GGGCGCTCAACTGGATCGAGAGTCCCGACG--CAACGTTCGGCGAGAGGCTGGTAGCCTT 42715 ||||||| ||||||||| || | || | |||| ||||| ||| | |||| ||||| Sbjct 898 GGGCGCTGAACTGGATCTCCAG-CAAGAAGGCCAAC-TTCGGGGAGCGTGTGGTTGCCTT 841 Query 42716 TACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCA 42775 | ||||| |||||||| |||||| ||| ||| || | ||||||||||| ||| | Sbjct 840 CGCTGCCGTTGAGGGCATTTTCTTCAGTGGCAGCTTTGCGGCTATCTTCTGGCTGAAGAA 781 Query 42776 GAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCT 42835 | | ||||| || || || ||||| ||||| || ||| | |||||||| || Sbjct 780 GCGCGGCCTAATGCCGGGGCTGACGTTCTCCAACGAGCTGATCTCGCGCGACGAGGGACT 721 Query 42836 GCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGAAGGA 42895 ||| | |||||||||||||| ||||| | | || ||| || || || ||||| Sbjct 720 GCACTGTGACTTTGCCTGCCTGATGTTC---CGGTATCTGGTGCAGAAACCGTCTAAGGA 664 Query 42896 GCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAGTC 42955 ||| || || |||||| || || || | ||||||| ||||||||||||| || | Sbjct 663 GCGCGTGACGGAGATCATCCGCGATGCGGTCGTGATCGAGCAGGAGTTCCTCACCAAGGC 604 Query 42956 GCTGCCCGTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCCAGTACGT 43015 |||||| || | || ||||||||||| ||| || |||| |||||||| ||| ||| Sbjct 603 GCTGCCGGTCGACATGCTCGGCATGAACTGCGAACTGATGTCGCAGTACATCGAGTTCGT 544 Query 43016 CGCCGA 43021 ||| || Sbjct 543 CGCGGA 538 >seq3577 Length=7701 Score = 271 bits (300), Expect = 1e-67 Identities = 997/1524 (65%), Gaps = 68/1524 (4%) Strand=Plus/Plus Query 243995 TCGATGTTCTGCACCGAGCCCTTGTGGACGATGAGCTGGGTGCG-CATGTTATCGTTCCA 244053 || || ||||| | ||| || ||||| | | || || || | ||| | ||||| ||| Sbjct 5954 TCAATCTTCTGGATCGATCCGTTGTGCGCCAGGAT-TGTGTTCTTCATTTCATCGTCCCA 6012 Query 244054 CAGGCCCAAGCGCTC-CAGCGCCTCGACCAGGTGCCTGTTCACCACCTGAAACTCTCCCG 244112 ||| ||| |||| ||| ||| || ||| || |||||| ||||||||||| |||| Sbjct 6013 CAG-CCCGTGCGCGGTCAGGTCCTTGATCAGATGATGGTTCACAACCTGAAACTCGCCCG 6071 Query 244113 ACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGGCTCGATGCTCTCCGTGTTGCCCA 244172 | ||||| || || | ||||| ||| || |||||||| ||| ||||||||| Sbjct 6072 AAAGCACTCGTCGGTTGTAGACGTTCGACGTGTACGGCTCGAAAGACTCGTTGTTGCCCA 6131 Query 244173 GTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACACCAGCAGACTGTTCCTCACGCCGT 244232 ||| || || || || || ||||| || | | |||||| ||| | | || | Sbjct 6132 ATATTTGAGCAGTCGAAGCTGTTGGCATCGGTGCTAGCAGCAGTGAGTTACGAATCCCAT 6191 Query 244233 GCCTCTGGATGCGGAGTCTGAGCTCGTTCCAGTCCCACATGCCCGAGAGGTCC-TCGCGT 244291 | | |||| | | || | | | |||| || || | |||||| ||| || Sbjct 6192 GTTT-----TGCGATCTTTTCCTTCAATGCCG-CCCA-ATTCC--ACAGGTCCGTCG-GT 6241 Query 244292 TTGAGGCCCCACATGTCAAACTGCAGCAGCCCCTTGCTGACGGGGCTGCCCTCGTAGGTC 244351 | | ||||||||| ||||||| | |||||||| || || | || ||||| ||| Sbjct 6242 TCCTTGTTCCACATGTCGTACTGCAGAATGCCCTTGCTTACCGGACAACCTTCGTACGTC 6301 Query 244352 GGGTAGGGACCGTCGCGCTGGGCCAGCTTACAGCTCTCGTCGAGGGCGGCGTAGTAGATG 244411 ||| || || || ||||| | ||||| | || | || | ||||||||| Sbjct 6302 TCGTACGGCCCATCCTTGGCGGCCAATTCGCAGCTAGCTTCCAACGCCCCATAGTAGATG 6361 Query 244412 GTCTCGAAGATCATCTTGTTCA--TGTCGCGGGCCTTGC-CGCAGGTGAAGGGGATGCCC 244468 || || || || || || | | | ||| ||||| | | | | || | |||| Sbjct 6362 GTTTCAAATATTTGCTGATTGAGCTTTTGCG---CTTGCTCACTCTCGTACGGAAAGCCC 6418 Query 244469 ATCATCATGAAGACGTCGGCCAGTCCCTGCACGCCGATGCCGATGGGTCTGTGTCGCTTG 244528 |||| ||||| | ||||||| ||||| || ||||||||||| || | ||| ||| || Sbjct 6419 ATCAAAATGAACGCATCGGCCATACCCTGGACACCGATGCCGATCGGACGGTGGCGCATG 6478 Query 244529 TTGGAGCGCATGGCTTCGGGCACGGGGTAAAAGTTGCCGTCGATCACCTTGTTGAGGTTG 244588 || ||||| | ||||| ||||| ||||| |||| |||| || | |||||| || ||| Sbjct 6479 TTCGAGCGTTTCGCTTCCGGCACCGGGTAGTAGTTCACGTCAATGATCTTGTTAAGATTG 6538 Query 244589 CGGGTGATCATGCGGACGACGTCGGCCAGCAGCTGAAAGTCGTACTCGTAGGGATCCTCG 244648 || || | || | |||| || |||| || || |||||| ||| | ||| Sbjct 6539 CGCGTTACGATCTTGGCGACCTCCTTCAGCTTCTTGAAATCGTAC--GTACGA----TCG 6592 Query 244649 GCGATGGTGATCCTCACAAACTCGTTGAGGGCGACGCTGGCCAGGTTGCAGACGGCCACC 244708 | | ||| |||||| ||| | || | ||||| ||||| |||||||| Sbjct 6593 G-GCTGG--------ACAAACATGTTCAACGCAATCGAGGCCAAATTGCACACGGCCACT 6643 Query 244709 TCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGGTGCCC 244768 || ||| | ||||| || ||||| ||||| ||||| |||||||||||||| Sbjct 6644 TCGTCCTTCGACGAGTACTCCACTATCTCAGTGCAAAGGTTCGAACACTTGATGGTGCCG 6703 Query 244769 AGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATGAAGGGCCCCCCG 244828 | || || || ||| ||| ||||| || |||||||| |||||| | || | || Sbjct 6704 ATGTTTTGCTGGTTGCTTTTGCGATTGCACGCATCCTTGTACAGCATGTACGGTACGCCC 6763 Query 244829 GTCTCGAGCTGGGCGACGAGGA-CGCTGTTCCAGAGGTCCCTAGCCTTGACC-GTCCTGC 244886 || || | ||| | ||| || ||| ||| || || ||||| || | | | Sbjct 6764 GTTTCCACCTGTGACTCGATGATCGCAAA-CCACAGATCTTGCGCCTTCACTTGACGTAT 6822 Query 244887 GAGCCTTGCCCTCTGCCTCGTAGCGGGTGTACAGGGCCTCGAACTCGGGGCCCCAGACCT 244946 | || | |||||||||||| | |||||||| ||||||||| |||||| | Sbjct 6823 AAACCGA-CACTCTGCCTCGTAACCCGTGTACAGCTTCTCGAACTCTTCGCCCCACGAAT 6881 Query 244947 CGTCTAGGCCGGGGCACGACG-CCGGGCACATGAGACTCCAC-TCGCCGCCGTCCTTGAC 245004 || | | ||||| || | || ||||||||| | ||||||| | | || ||| || Sbjct 6882 CGGCCAATCCGGGACA-GTCGTGCGGGCACATCAAACTCCACATTTCATTCG-CCTCCAC 6939 Query 245005 CCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGCTC 245064 | || |||||| || || || |||||||| || | ||| | ||| | | | ||| Sbjct 6940 ACGCTTCATGAACAGATCCGGTATCCAGAGAGCGTAGAACATGTCGCGAGCGCGAACCTC 6999 Query 245065 GTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGCTC 245124 ||| ||| ||||| ||| |||| |||| ||| ||||| || || ||||||| || || Sbjct 7000 CTCCTTGCCGGTGTTTTTCTTCAGATCCAGAAACTCAAACACATCACCGTGCCACGGTTC 7059 Query 245125 CATGTAGACAGCGAGGGCGCCGGGCCGCTTGTTGCCTCCCTGGTCCAC-CATCCTCTCGA 245183 | ||||| ||| | ||||| |||||||| || || ||||| || || | | | || Sbjct 7060 GAGGTAGATAGCAAACGCGCCTGGCCGCTTATTACCGCCCTGATCAACGTACCGTGCCGT 7119 Query 245184 GCGCGTTGAAGATGCGCAGGGTAGGCACTATGCCGTTAGAGTGGCCGTTGGTGCCCTTGA 245243 | |||| | | || || | || || | ||||| || ||||| || || || Sbjct 7120 G-TTGTTGTACACACGTAGCATCGGTACCAACCCGTTCGAAATACCGTTCGTACCGGAGA 7178 Query 245244 TGTAGGCGCCCTTGCCCCTGAGGTTGCTGATGGACAT----GCCTAGTCCGCCGGCGTGC 245299 |||| | ||||| | | || ||| | || |||| || | || ||||| Sbjct 7179 TGTACGTTCCCTTCGCAC---GGATGCAG-TGCACATTCAGCCCGATACCACCGGCCGAT 7234 Query 245300 TTGGAGATGAGGGCGCAGCTCTTGATGGTGTCTGCTATGCCCTCCATGCT---GTCCGAC 245356 |||||||| | ||||| ||| | || || || || || ||||| |||||| Sbjct 7235 TTGGAGATCAATGCGCACTGCTTCAATGTATCGTAGATACCGTCGATGCTATCGTCCGA- 7293 Query 245357 TTCATGTTGAGCAGAAAGCAGGAGGACAGCTGGG---GCTTGG-GGCTGCACGAGTTGAA 245412 ||| | ||||||||||| || || ||||| | ||| || ||| || || || Sbjct 7294 --CATCGTCAGCAGAAAGCAAGACGAAAGCTGAGGACGCTGGGTGGCCGC-CG---CAAA 7347 Query 245413 CAGAGTGGGGCTGGCGTGGGTAAAGTAGCGGCTCGAGAGGAACCCGTACGTCTGGAGCAG 245472 || || || ||||||||||||||| || ||| || | |||||||| || | Sbjct 7348 CATGGTCGGAGAGGCGTGGGTAAAGTAACGCTCCGAAAGCAGATTGTACGTCTCGATCGC 7407 Query 245473 AGCGTCGATGTTGTCGCCGTGGAT 245496 || || |||| ||||||||||| Sbjct 7408 TGCCTCAATGTCCTCGCCGTGGAT 7431 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944093978718240