Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20punctulatus_20[genbank_20GCA_5F000956255.1_202015-03-19] 20,774 sequences; 146,157,495 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq5576 134 3e-26 seq3192 122 2e-22 seq4173 93.3 1e-13 seq1711 91.5 3e-13 >seq5576 Length=36905 Score = 134 bits (148), Expect = 3e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||||| || || || |||| ||| || || |||||||| ||||| | Sbjct 18786 CCACCACGGAGTCGGAGCACCAGGTGAAGAGTGGACTCCTTCTGGATATTGTAGTCCGAC 18727 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || || || ||||| | || ||||| ||||||||||||||||| ||| ||| Sbjct 18726 AGGGTACGGCCATCTTCCAGCTGCTTTCCGGCGAAGATCAGACGCTGCTGATCCGGAGGG 18667 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || ||||| |||||||| || || || ||||| ||||| || | || | || || Sbjct 18666 ATGCCTTCCTTATCCTGAATCTTGGCCTTCACATTTTCGATCGTGTCCGAGGGCTCGACC 18607 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || ||||| ||||| ||||| || || || ||||| |||||||| Sbjct 18606 TCAAGAGTGATGGTCTTGCCGGTGAGTGTTTTCACGAAAATCTGCAT 18560 >seq3192 Length=14073 Score = 122 bits (134), Expect = 2e-22 Identities = 146/196 (74%), Gaps = 12/196 (6%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || ||||||| || ||||||||||| || | || || || |||||| Sbjct 191 TCCTTCTGGATGTTGTAGTCGGACAGAGTGCGTCCGTCCTCCAGCTGCTTGCCGGCGAAG 132 Query 288343 ATCAGACGCTGTTGAGAATCT---GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 ||||||||||| || |||| |||||||| || || |||||||| || || || || Sbjct 131 ATCAGACGCTGCTG---ATCTGGAGGGATTCCCTCCTTGTCCTGGATCTTGGCCTTGACA 75 Query 288400 TTTTCTATAGAATCGCTCGAT---TCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTC 288456 || || || | ||| |||| || || || || ||||| ||||| || ||||| ||| Sbjct 74 TTCTCGATCGTATC---CGATGGCTCGACCTCCAGAGTGATGGTCTTGCCAGTCAGCGTC 18 Query 288457 TTGACGAATATCTGCA 288472 || ||||| |||| || Sbjct 17 TTCACGAAGATCTCCA 2 >seq4173 Length=11039 Score = 93.3 bits (102), Expect = 1e-13 Identities = 89/113 (79%), Gaps = 6/113 (5%) Strand=Plus/Minus Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGAT--- 288420 ||||| ||||| |||||||| || || || |||||||| || || | || |||| Sbjct 11036 GGGATGCCTTCCTTATCCTGAATCTTAGCCTTCACGTTCTCGATGGTGTC---CGATGGC 10980 Query 288421 TCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || |||||||| ||||| |||||||||||||||||||| || ||||| Sbjct 10979 TCCACCTCCAGCGTGATGGTCTTTCCGGTCAGAGTCTTGACGAAGATTTGCAT 10927 >seq1711 Length=9628 Score = 91.5 bits (100), Expect = 3e-13 Identities = 251/382 (66%), Gaps = 2/382 (1%) Strand=Plus/Minus Query 72416 CCAAGCGTCTTCGTCAGAGTTGTATGGAAAAGTGCAAGAAATTCCTCAGACGGAAAATAC 72475 ||| ||||| |||| || | ||||| || ||| |||| || || | ||||| || Sbjct 4620 CCAGGCGTCCACGTCCGAACTCTATGGCAAGGTGGTCGAAACGCCGCAAAACGAAAAAAC 4561 Query 72476 TCCGTTTTATCCTCGAAGCCCTTACG-GTGTTGCAAAGTTGTACGCTTATTGGATCTGTA 72534 ||| || ||||| || || |||| |||| || || |||||| || ||||| | Sbjct 4560 TCCATTCTATCCGCGCTCACCGTACGCGTGT-GCGAAAATGTACGGCTACTGGATAGTGA 4502 Query 72535 AAAATTACCGTGAGTCGTATAACATGTATGTATGCAACTCGATTTGTTTCAATCACGAGA 72594 || || || || |||| ||||||| || |||||| ||| ||||| ||||| Sbjct 4501 TCAACTATCGCGAAGCGTACAACATGTTTGCCTGCAACGGTATTCTCTTCAACCACGAAT 4442 Query 72595 GTCCCAACAGAGGCCATCAGTTCGTGACTCGTAAAATCACGAAGGTGGTCGCGAATATTT 72654 ||| | || | | || ||||| || |||||||| ||| ||||| |||| Sbjct 4441 CGCCCCGGCGGGGTGAGAACTTTGTGACACGCAAAATCACTCGCTCGGTGGCGAAGATTT 4382 Query 72655 TCAATGGTGTCGAAAAATGCATGTATCTCGGTAATATAGATGCCAAAAGAGATTGGGGAT 72714 || | | ||| | | || |||||| | ||| | || | || ||||| Sbjct 4381 CGCTCGGCCAGCAGGAGTGCGTCGAGCTGGGTAATCTCGATTCGAAGCGCGACTGGGGCC 4322 Query 72715 ATGCGAAGGATTACGTAGAAGCAATGTGGTTGATGCTGCAACAAGATACTCCGGATGACT 72774 | ||||| || ||||| |||||||||||||||||| |||| || | ||||| || | Sbjct 4321 ACGCGAAAGACTACGTCGAAGCAATGTGGTTGATGATGCAGCAGAAGCAGCCGGAAGATT 4262 Query 72775 ATGTGATTGCAACAGGGAAAAC 72796 || ||||| || || |||| Sbjct 4261 TCGTCATTGCTACGGGCGAAAC 4240 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179340415074772