Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20punctulatus_20[genbank_20GCA_5F000956255.1_202015-03-19] 20,774 sequences; 146,157,495 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq1609 91.5 2e-13 seq17781 89.7 6e-13 seq18363 87.8 2e-12 seq10718 87.8 2e-12 seq8286 87.8 2e-12 seq7848 87.8 2e-12 seq5495 87.8 2e-12 seq5408 87.8 2e-12 seq1098 87.8 2e-12 seq15829 86.0 7e-12 seq20519 84.2 2e-11 seq9124 84.2 2e-11 >seq1609 Length=20686 Score = 91.5 bits (100), Expect = 2e-13 Identities = 65/75 (87%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| || | | |||||||||| ||||||||||||||||||||| ||||| |||||| Sbjct 17471 TCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACT 17412 Query 57066 ATACTACCGAGGATT 57080 |||||| |||||||| Sbjct 17411 ATACTATCGAGGATT 17397 >seq17781 Length=10998 Score = 89.7 bits (98), Expect = 6e-13 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 57005 TTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCAC 57064 |||||| || | | |||||||||| ||||||||||||||||||||| ||||| ||||| Sbjct 2724 TTCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCAC 2665 Query 57065 TATACTACCGAGGA 57078 ||||||| |||||| Sbjct 2664 TATACTATCGAGGA 2651 >seq18363 Length=1419 Score = 87.8 bits (96), Expect = 2e-12 Identities = 65/76 (86%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 57004 TTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCA 57063 || |||| || | | |||||||||| ||||||||||||||||||||| ||||| |||| Sbjct 593 TTCCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCA 652 Query 57064 CTATACTACCGAGGAT 57079 |||||||| ||||||| Sbjct 653 CTATACTATCGAGGAT 668 Score = 86.0 bits (94), Expect = 7e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 872 CTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTA 813 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 812 TACTATCGAGGA 801 Score = 84.2 bits (92), Expect = 2e-11 Identities = 54/59 (92%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 57020 AATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTACCGAGGA 57078 |||||||||| ||||||||||||||||||||| ||||| |||||||||||| |||||| Sbjct 1406 AATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTATACTATCGAGGA 1348 >seq10718 Length=30795 Score = 87.8 bits (96), Expect = 2e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| || | | |||||||||| ||||||||||||||||||||| ||||| |||||| Sbjct 20068 TCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACT 20127 Query 57066 ATACTACCGAGGA 57078 |||||| |||||| Sbjct 20128 ATACTATCGAGGA 20140 >seq8286 Length=21328 Score = 87.8 bits (96), Expect = 2e-12 Identities = 68/80 (85%), Gaps = 2/80 (3%) Strand=Plus/Minus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| || | | |||||||||| ||||||||||||||||||||| ||||| |||||| Sbjct 11054 TCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACT 10995 Query 57066 ATACTACCGAGGA--TTGAA 57083 |||||| |||||| ||||| Sbjct 10994 ATACTATCGAGGACCTTGAA 10975 >seq7848 Length=5010 Score = 87.8 bits (96), Expect = 2e-12 Identities = 67/78 (86%), Gaps = 1/78 (1%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 5010 CTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTA 4951 Query 57067 TACTACCGAGGAT-TGAA 57083 ||||| ||||||| |||| Sbjct 4950 TACTATCGAGGATGTGAA 4933 >seq5495 Length=11436 Score = 87.8 bits (96), Expect = 2e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| || | | |||||||||| ||||||||||||||||||||| ||||| |||||| Sbjct 4667 TCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACT 4726 Query 57066 ATACTACCGAGGA 57078 |||||| |||||| Sbjct 4727 ATACTATCGAGGA 4739 >seq5408 Length=43822 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 41999 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 42058 ||||| ||| | || |||||| || ||||||||||| | ||| || || | || || Sbjct 36934 CACCAGATGAAGGGTCGACTCCTTCTGGATATTGTAATCGGACAGCGTGCGGCCATCCTC 36993 Query 42059 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCAT 42118 |||||||| || ||||| ||||| |||||||| || | || | | |||||||||| Sbjct 36994 CAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGATCCGGCGGGATACCCTCCTTGTCCTG 37053 Query 42119 GATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTT 42178 ||| || || | || | | ||| || | || || || | || ||||| || Sbjct 37054 GATCTTCGCCTTCACATTCTCGATCGTATCCGAGGGCTCGACCTCAAGGGTAATGGTCTT 37113 Query 42179 GCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 42211 ||||| || || || || ||||| ||||| || Sbjct 37114 ACCCGTGAGGGTTTTGACGAAGATCTGCATCTT 37146 >seq1098 Length=25061 Score = 87.8 bits (96), Expect = 2e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| || | | |||||||||| ||||||||||||||||||||| ||||| |||||| Sbjct 16680 TCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACT 16621 Query 57066 ATACTACCGAGGA 57078 |||||| |||||| Sbjct 16620 ATACTATCGAGGA 16608 >seq15829 Length=8462 Score = 86.0 bits (94), Expect = 7e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 8462 CTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTA 8403 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 8402 TACTATCGAGGA 8391 >seq20519 Length=4717 Score = 84.2 bits (92), Expect = 2e-11 Identities = 66/79 (84%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 56998 AAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 57057 |||||| |||| || | | |||||||||| ||||||||||||||||||||| |||| Sbjct 4637 AAAAATCGCCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 4696 Query 57058 TCACCACTATACTACCGAG 57076 | |||||||||||| |||| Sbjct 4697 TGACCACTATACTATCGAG 4715 >seq9124 Length=8731 Score = 84.2 bits (92), Expect = 2e-11 Identities = 54/59 (92%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 57020 AATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTACCGAGGA 57078 |||||||||| ||||||||||||||||||||| ||||| |||||||||||| |||||| Sbjct 8718 AATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTATACTATCGAGGA 8660 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543071741216160