Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20punctulatus_20[genbank_20GCA_5F000956255.1_202015-03-19] 20,774 sequences; 146,157,495 total letters Query= NC_011335.1 Length=119343 Score E Sequences producing significant alignments: (Bits) Value seq12286 100 2e-16 seq442 98.7 8e-16 seq7848 87.8 1e-12 >seq12286 Length=26372 Score = 100 bits (110), Expect = 2e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 108340 GCCGGGTTCGGTGTGACGGCCGGCGTCCATCGGATGTGGACCCACAAAGCCTACAAGGCC 108399 || ||||||||||| |||||||| | ||| ||| ||||||| ||| || |||||||| Sbjct 5090 GCTGGGTTCGGTGTTACGGCCGGTGCCCACCGGCTGTGGACGCACCGGGCGTACAAGGCG 5149 Query 108400 ACCGCCCCGTTCAGGGTGTTCCTGGCGCTTTGCTTCTCGGTGGCAGGACAGAACACCATC 108459 | ||| || | | |||| | |||| || || | || ||||||| | | Sbjct 5150 AAGCTGCCGCTCCGCATCATCCTCATGTGCTGCTACTGTCTGTCCGGCCAGAACAGCCTG 5209 Query 108460 CCGCAGTGGGTGCTCGATCACAGGGTTCACCACAAGTACTCTGACACGACGGCCGACCCA 108519 | ||||||| ||||||| | | || ||||||||||| || ||| || || || Sbjct 5210 TACGATTGGGTGCGCGATCACCGCATCCATCACAAGTACTCGGAGACGGACGCGGATCCG 5269 Query 108520 CACAACGCCAACAGGGGGTTCTGGTTCTCGCACGTGGGATGGCTCATGAT 108569 |||||| | ||| |||| |||| | | ||||||| || ||||| |||| Sbjct 5270 CACAACTCGAACCGGGGCTTCTTCTACGCGCACGTCGGCTGGCTGCTGAT 5319 Score = 87.8 bits (96), Expect = 1e-12 Identities = 66/78 (85%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 108881 TGGCTCTCGGCGAGGGATGGCACAACTACCACCACGTGTTCCCCTACGACTACAAGGCCG 108940 ||||| | ||||| |||||||||||||| ||||| |||||||| | ||||||||||| | Sbjct 2161 TGGCTATGGGCGAAGGATGGCACAACTATCACCATGTGTTCCCGTGGGACTACAAGGCGG 2220 Query 108941 CCGAGTTGGGGAACGACT 108958 ||||| |||| ||| ||| Sbjct 2221 CCGAGCTGGGCAACTACT 2238 Score = 82.4 bits (90), Expect = 6e-11 Identities = 60/70 (86%), Gaps = 0/70 (0%) Strand=Plus/Plus Query 108889 GGCGAGGGATGGCACAACTACCACCACGTGTTCCCCTACGACTACAAGGCCGCCGAGTTG 108948 ||||| |||||||||||||||||||| |||||||| | ||||||||||| ||||| || Sbjct 5847 GGCGAAGGATGGCACAACTACCACCATGTGTTCCCGTGGGACTACAAGGCGGCCGAACTG 5906 Query 108949 GGGAACGACT 108958 || ||| ||| Sbjct 5907 GGCAACTACT 5916 >seq442 Length=11777 Score = 98.7 bits (108), Expect = 8e-16 Identities = 171/246 (70%), Gaps = 2/246 (1%) Strand=Plus/Plus Query 108340 GCCGGGTTCGGTGTGACGGCCGGCGTCCATCGGATGTGGACCCACAAAGCCTACAAGGCC 108399 ||||||||||| ||||| | || || || ||| ||||| ||| | |||||||| Sbjct 11205 GCCGGGTTCGGCGTGACCGGTGGGGTGCACCGGCTGTGGTGCCATCGGTCGTACAAGGCG 11264 Query 108400 ACCGCCCCGTTCAGGGTGTTCCTGGCGCTTTGCTTCTCGGTGGCAGGACAGAACACCATC 108459 | ||| || | | |||| | |||| |||| | || || |||||||| ||| Sbjct 11265 AAGCTGCCGCTCCGCATCATCCTCATGTGCTGCTACTCGATAGCCGGCCAGAACACGATC 11324 Query 108460 CCGCAGTGGGTGCTCGATCACAGGGTTCACCACAAGTACTCTGACAC-GACGGCCGACCC 108518 | ||||| | || || | |||||||||||||||| || || ||||| || || Sbjct 11325 TACGACTGGGTCCGGGACCATCGCATTCACCACAAGTACTCGGAAACGGACGG-TGATCC 11383 Query 108519 ACACAACGCCAACAGGGGGTTCTGGTTCTCGCACGTGGGATGGCTCATGATGACCAAGGA 108578 ||||||||| ||| |||| ||| || | ||||||| || ||||| ||| | |||| | Sbjct 11384 ACACAACGCAAACCGGGGCTTCCTGTACGCGCACGTCGGCTGGCTGATGCTTCGCAAGCA 11443 Query 108579 CCCCGA 108584 ||| || Sbjct 11444 CCCGGA 11449 >seq7848 Length=5010 Score = 87.8 bits (96), Expect = 1e-12 Identities = 72/88 (82%), Gaps = 0/88 (0%) Strand=Plus/Plus Query 108870 GGTGGCGGCGTTGGCTCTCGGCGAGGGATGGCACAACTACCACCACGTGTTCCCCTACGA 108929 |||||| |||| || ||||||| || ||||||||||| |||||||||||||| | || Sbjct 1066 GGTGGCTTCGTTCGCATTCGGCGAAGGTTGGCACAACTATCACCACGTGTTCCCGTGGGA 1125 Query 108930 CTACAAGGCCGCCGAGTTGGGGAACGAC 108957 ||||||| | |||||| |||| ||| || Sbjct 1126 CTACAAGACGGCCGAGCTGGGCAACTAC 1153 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381676141569456