Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20punctulatus_20[genbank_20GCA_5F000956255.1_202015-03-19] 20,774 sequences; 146,157,495 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq17361 199 6e-46 seq3577 197 2e-45 >seq17361 Length=8649 Score = 199 bits (220), Expect = 6e-46 Identities = 471/702 (67%), Gaps = 12/702 (2%) Strand=Plus/Plus Query 159745 CAGCAACCTGTCTGCCACAAATTCGATGTAGCTAC-ACATCTGCTCACAGTTGATCCCCA 159803 |||||||| || || || || |||||||| || | ||||| | || ||||| || || | Sbjct 528 CAGCAACCGATCCGCGACGAACTCGATGTA-CTGCGACATCAGTTCGCAGTTCATGCCGA 586 Query 159804 GCAGCCTAACGGGGAGCGCTTCCGACAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCA 159863 ||| || || ||||| | | || ||||||| ||| ||| ||||||| ||| | Sbjct 587 GCATGTCGACCGGCAGCGCCTTGGTGAGGAACTCCTGCTCGATCACGACCGCATCGCGGA 646 Query 159864 CAATCTGCGAGACACGTTCGTACCCCGGCTTGCCCAAAATGTGGTCCTTAAACAGGAGGC 159923 |||| || || || || | ||| || || | | | | |||| |||| Sbjct 647 TGATCTCCGTCACGCGCTCCTTAGACGGTTTCTGCACCA---GATACCGGAACATCAGGC 703 Query 159924 ACGCAAAGTCGCAGTGCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGC 159983 | |||||||| ||||||||||||||||| || ||||| | ||||||||| | | || | Sbjct 704 AGGCAAAGTCACAGTGCAGTCCCTCGTCGCGCGAGATCAGCTCGTTGGAGAACGTCAGCC 763 Query 159984 CCGGCATGATCCCACGCGGTTTGAGCCAAAAAATGGCCGCAAAAGCACCGCTAAAAAAGA 160043 ||||||| | || ||| || ||||| || || |||||||| || || || || | Sbjct 764 CCGGCATTAGGCCGCGCTTCTTCAGCCAGAAGATAGCCGCAAAGCTGCCACTGAAGAAAA 823 Query 160044 TCCCCTCCACGGCCGCAAACGCCACGAGCCTCTCACCAAAAGAGGCGTTGGTGTCATGGG 160103 | ||||| ||||| || || || || | | ||| || || ||| || || | Sbjct 824 TGCCCTCAACGGCAGCGAAGGCAACCACACGCTCCCCGAAGTTGGCCTTCTTGCTGGAGA 883 Query 160104 TCCACCTTTTGGCCCATTCAGCCTTCTTTGCGATGCACGGCATGCG-CTCGACGGCGTTA 160162 |||| | ||||| || |||||||| || |||||| | ||| |||| ||||| Sbjct 884 TCCAGTTCAGCGCCCAGTCGGCCTTCTTCTTGACGCACGGTA-GCGTTTCGATCGCGTTG 942 Query 160163 AACAATCTGTCCTGCTCCTTCACATCCTTGATCAGAGTAGCAATCAGCTTCGAGTACATT 160222 |||| ||| |||| ||| || || || | |||||| |||||||||| Sbjct 943 AACAGATACTCCCGCTCGTTCGGGTCGCGTATGTACGTGTCGATCAGCAGCGAGTACATT 1002 Query 160223 TCTGCGTGCACATTTTCGATGGCCATCTGAAAGTTGTAGAAATATGTCGCCTCCAGATAC 160282 || |||||| || || || || |||||||| |||||| | |||||| | Sbjct 1003 TCACTGTGCACGTTCTCCATCGCAATCTGAAACCCGTAGAAGCAGCGGGCCTCCGTCACC 1062 Query 160283 TGCACCTCCTGTGTGAACCTTTGACCCAGATTGGCATTAACCAACCCGTCGGCGGCCGCA 160342 ||||||||||| |||| | | ||||||| | || || | ||||| | ||| || Sbjct 1063 TGCACCTCCTGGCTGAAGCGCTCCACCAGATTCTCGTTTACGATACCGTCCGAGGCGGCG 1122 Query 160343 AAGAAAGCCAACACGTGAGAGATGAAATGTCTCTCG-TCTTTGTTGAGTCTCTTTTCCCA 160401 ||||| || | ||||| |||||||| || | |||| || | ||||| | |||||| Sbjct 1123 AAGAAGGCAAGTACGTGCGAGATGAAGTGACGCTCGCTCGGT-TTGAG---CGATTCCCA 1178 Query 160402 GTGTGTCACGTCTTGGGCCAAATCAACCTCTTCCGCGCTCCA 160443 || | ||| ||| | | || || ||||||||| | |||| Sbjct 1179 GTCTTTCATGTCCTTCGACAGGTCCACCTCTTCCACTGTCCA 1220 >seq3577 Length=7701 Score = 197 bits (218), Expect = 2e-45 Identities = 457/687 (67%), Gaps = 4/687 (1%) Strand=Plus/Plus Query 203829 GAACCTTCGTCTTGTCCACCGTGAACTGAATGGCGTTCACGGCAGGCCTGCTTCTCAGAT 203888 ||| |||||| ||||| ||||||||||| || || || ||||| ||| | | | || || Sbjct 5691 GAAGCTTCGTTTTGTCGACCGTGAACTGGATCGCATTTACGGCCGGCTTCGTGCGCAAAT 5750 Query 203889 AGTACATGCCGGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGC 203948 |||||||||| ||||| | ||| ||| |||| ||| | ||| || || | ||||| | Sbjct 5751 AGTACATGCCAGTCTTCAAACCCATCTTCCACGCGTGAAAGTGGATCGAGGTAAGTTTAC 5810 Query 203949 TCACGTTGGGGTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCCC 204008 |||||| ||||||| ||| ||||| | || ||| ||||||||||| | | | Sbjct 5811 CGTAGTTGGGTTCGGCCACGTGTATGTTGAACGATTGGGACTGGTCGATGAACGCTCCAC 5870 Query 204009 GATCTGCGGCCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACACGT 204068 |||| || ||||| | ||| || || |||||||||||| ||||| ||| ||| | Sbjct 5871 GATCGGCCGCCATTTGGATGCACGTTTTGACCGAAATCTCCCAAACCGTTTTGTACAGAT 5930 Query 204069 CTCTGGTGTGTTGAGGCACATCTTCCCA--CGTCCTGATCGAGCCGTTGTCGGCCATCAG 204126 | | || | || || ||| || | || |||||| ||||||| |||| | Sbjct 5931 CGCGCACGTCCTTTGG--TATTTTCTCAATCTTCTGGATCGATCCGTTGTGCGCCAGGAT 5988 Query 204127 TCTCATCCTCGTCTCCTCCCCCCACATGCCCAACCTGATCAGCTCCCGCACCAGGTGGGG 204186 | | || || | || || |||||| || | | |||| ||| | ||| || | Sbjct 5989 TGTGTTCTTCATTTCATCGTCCCACAGCCCGTGCGCGGTCAGGTCCTTGATCAGATGATG 6048 Query 204187 GTTGATGATCTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGG 204246 ||| | | |||||| || || || ||||| | |||| || | | ||| ||| | || Sbjct 6049 GTTCACAACCTGAAACTCGCCCGAAAGCACTCGTCGGTTGTAGACGTTCGACGTGTACGG 6108 Query 204247 TTCGAACGCCTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAG 204306 ||||| | |||||||||||| || || ||||| || || || ||||| || || || Sbjct 6109 CTCGAAAGACTCGTTGTTGCCCAATATTTGAGCAGTCGAAGCTGTTGGCATCGGTGCTAG 6168 Query 204307 GAGCAGGGAGTTGCGCACACCGTATTTTTGGACCCTGCGCTTCAGAGAGGTCCAGTCGTG 204366 ||||| ||||| || | || | |||| || | | ||||| | | ||| | Sbjct 6169 CAGCAGTGAGTTACGAATCCCATGTTTTGCGATCTTTTCCTTCAATGCCGCCCAATTCCA 6228 Query 204367 CATCGCACTGGGTTTCACGCCCCACATGTCGAACTGAAAGATGCCTTGACTGACTGGGCT 204426 || | | |||| | | |||||||||| |||| | ||||| | || || || | Sbjct 6229 CAGGTCCGTCGGTTCCTTGTTCCACATGTCGTACTGCAGAATGCCCTTGCTTACCGGACA 6288 Query 204427 GCCCTTGTACGTCGGATAAGGCTGATCCTCTTCTGCCAGCTTGCACGAGGCGGCCATGGC 204486 || | ||||||| || ||| ||||| | |||| | ||| || ||| || Sbjct 6289 ACCTTCGTACGTCTCGTACGGCCCATCCTTGGCGGCCAATTCGCAGCTAGCTTCCAACGC 6348 Query 204487 GTGATAGTACATGGTCTCAAAGATCTG 204513 |||||| ||||| ||||| || || Sbjct 6349 CCCATAGTAGATGGTTTCAAATATTTG 6375 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 794948718073440