Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20punctulatus_20[genbank_20GCA_5F000956255.1_202015-03-19] 20,774 sequences; 146,157,495 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq5408 91.5 1e-13 seq3192 86.0 4e-12 >seq5408 Length=43822 Score = 91.5 bits (100), Expect = 1e-13 Identities = 139/196 (71%), Gaps = 4/196 (2%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| || || || || || || | || |||| |||||||| || ||||| || Sbjct 36953 TCCTTCTGGATATTGTAATCGGACAGCGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAAG 37012 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || ||||| || |||| | ||||||||||| |||||| || || || Sbjct 37013 ATGAGACGCTGCTGATCCGGCGGGATACCCTCCTTGTCCTGGATCTTCGCCTTCAC--AT 37070 Query 34911 GCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCA 34968 || |||| || || ||| || || | ||| ||||| || |||||||| || || | Sbjct 37071 TCTCGATCGTATCCGAGGGCTCGACCTCAAGGGTAATGGTCTTACCCGTGAGGGTTTTGA 37130 Query 34969 CAAAGATCTGCATATT 34984 | ||||||||||| || Sbjct 37131 CGAAGATCTGCATCTT 37146 >seq3192 Length=14073 Score = 86.0 bits (94), Expect = 4e-12 Identities = 146/210 (70%), Gaps = 4/210 (2%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||| | || || ||||| ||||| ||||| || || | ||| | || ||| Sbjct 209 ACCAAGTGCAAGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGTCCGTCCTCC 150 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| || ||||| || || || || ||||| ||| | || | ||||||||||| Sbjct 149 AGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGAGGGATTCCCTCCTTGTCCTGG 90 Query 34893 ATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTT 34950 ||||| ||||| || || |||| || | ||| || || | || ||||| | Sbjct 89 ATCTTGGCCTTGAC--ATTCTCGATCGTATCCGATGGCTCGACCTCCAGAGTGATGGTCT 32 Query 34951 TTCCCGTGAGAGTCTTCACAAAGATCTGCA 34980 | || || || |||||||| ||||||| || Sbjct 31 TGCCAGTCAGCGTCTTCACGAAGATCTCCA 2 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324551408250672