Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20punctulatus_20[genbank_20GCA_5F000956255.1_202015-03-19] 20,774 sequences; 146,157,495 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq8981 100 2e-16 seq5408 93.3 3e-14 >seq8981 Length=25070 Score = 100 bits (110), Expect = 2e-16 Identities = 190/280 (68%), Gaps = 0/280 (0%) Strand=Plus/Plus Query 13655 AATTTTCGTTTACAACCTTCAAAATTCATGTGTCGTATTTTACCATAGATTGGTCGCTCC 13714 || ||||| || || || || | ||||||| || ||||| ||| | || |||||| Sbjct 6375 AACTTTCGCTTGCAGCCGTCGTAGTTCATGTAGCGAATTTTGCCAAAAATGTCCCGCTCC 6434 Query 13715 ATCCAGGCACGATCGTGAGTTCCGCATATTGACCACATGCAACCGGCATAACCGTTGGGA 13774 |||| | |||| || | ||| || ||||||||||| ||| | || || || ||| Sbjct 6435 TTCCATCCCTGATCATGGATGCCGGCGATCGACCACATGCACCCGACGTATCCATTCGGA 6494 Query 13775 TCGCGTCCATCCAAACTGTATTTGTCGTTGAAATATATGGCGTTGATTAAAGCCACTGTA 13834 ||||| ||||||| |||||| ||||| | ||| ||||| | | || | Sbjct 6495 TCGCGCCCATCCAGACTGTAGCGATCGTTCAGATAGATGGCCGTTTCGAGCGCTTCCTCG 6554 Query 13835 GGCGAAATAGACCATTCTAATAtttttttAGCCCAATATATTCTCATATATCCGTGCATT 13894 |||| | | ||| |||| |||||| || ||||| || || | || | |||||||| Sbjct 6555 GGCGTTTTCGTCCACTCTAGTATTTTCTTCGCCCAGTACATGCGCAGGAACCCGTGCATC 6614 Query 13895 TTGCCTTGCGTTTTAAGCTGTGTCTGAGCAGCGTTCCACA 13934 ||| | | | || ||||| ||| || |||||||||| Sbjct 6615 TTGGCCTCCTTTACTAGCTGCAGCTGGGCTGCGTTCCACA 6654 >seq5408 Length=43822 Score = 93.3 bits (102), Expect = 3e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 101266 ATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTG 101325 ||||||||| || || || || ||||||||||||| | || | | |||| |||| || Sbjct 36940 ATGAAGGGTCGACTCCTTCTGGATATTGTAATCGGACAGCGTGCGGCCATCCTCCAGCTG 36999 Query 101326 CTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTT 101385 ||| || || || || | |||||| ||||| ||||| || || || || || || || || Sbjct 37000 CTTGCCGGCGAAGATGAGACGCTGCTGATCCGGCGGGATACCCTCCTTGTCCTGGATCTT 37059 Query 101386 TTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGT 101445 || ||| | || | || || || | || || ||||| || | || || || || Sbjct 37060 CGCCTTCACATTCTCGATCGTATCCGAGGGCTCGACCTCAAGGGTAATGGTCTTACCCGT 37119 Query 101446 TAAAGTTTTTACAAATATCTGCAT 101469 | ||||| || || |||||||| Sbjct 37120 GAGGGTTTTGACGAAGATCTGCAT 37143 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396178068996318