Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20punctulatus_20[genbank_20GCA_5F000956255.1_202015-03-19] 20,774 sequences; 146,157,495 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq9632 168 5e-37 seq5408 95.1 9e-15 seq5576 93.3 3e-14 >seq9632 Length=10527 Score = 168 bits (186), Expect = 5e-37 Identities = 222/308 (72%), Gaps = 0/308 (0%) Strand=Plus/Plus Query 8995 TTAGTACCGGTTGACCCAAACCCTCCCTCTCCGCGATTGGTGTCAGTCGTGGAAGTAACC 9054 || || || || || ||||| ||||| | || |||| ||||| ||| || | | | Sbjct 9136 TTGGTGCCAGTCGATCCAAATCCTCCAGCCCCACGATCCGTGTCGGTCAGCGACGGTAGC 9195 Query 9055 TCTACCAGTGTGGGATAAAAGATTTGTTCACAAATTAATTGAGCAATCCTGTCCCCCTTA 9114 ||| ||| ||||| || | ||| || || ||||| ||||| | || ||||| Sbjct 9196 TCTTCCAAGTCCGGATAGGCTATCTTTTCGCAGATGAATTGCGCAATACGATCACCCTTC 9255 Query 9115 TTCACGACAAAGTCTGTGTCGGAATGATTGAACAGCACCACTCCCACGTTACCCCTGTAA 9174 ||||| || || || | ||||| || ||||||||||| || || ||||| |||| ||| Sbjct 9256 TTCACCACGAAATCCATCTCGGAGTGGTTGAACAGCACAACACCAACGTTTCCCCGGTAG 9315 Query 9175 TCCTCATCGATCACACCAGCACCCACGTCGATGAAGTGCTTGACCGCTAGTCCAGAGCGG 9234 ||||| || | ||||| || ||||| |||||||||| || |||||||| || || || Sbjct 9316 TCCTCGTCAACGACACCTGCCCCCACATCGATGAAGTTTTTCACCGCTAGCCCGGACCGT 9375 Query 9235 GGCGCGATTCGACCGTAGCATCCCACCGGTAATTGCACCCGCAAGTCGGTCATGACCAGC 9294 ||||| | || ||||| || || |||||| |||||| | | ||||||||| || ||| Sbjct 9376 GGCGCCACACGCCCGTAACAGCCTTCCGGTACCTGCACCTGGATGTCGGTCATTACGAGC 9435 Query 9295 CCCTTGCC 9302 |||||| Sbjct 9436 TGCTTGCC 9443 >seq5408 Length=43822 Score = 95.1 bits (104), Expect = 9e-15 Identities = 154/222 (69%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || | ||||| ||| || || ||| || || ||||||||||| || || | || Sbjct 36926 AGGCGAAGCACCAGATGAAGGGTCGACTCCTTCTGGATATTGTAATCGGACAGCGTGCGG 36985 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || |||| |||||| ||||| || || || ||||| ||||||| || | |||||| Sbjct 36986 CCATCCTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGATCCGGCGGGATACCCTCC 37045 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||||| || ||| | | | || || | ||| ||||| | ||| Sbjct 37046 TTGTCCTGGATCTTCGCCTTCACATTCTCGATCGTATCCGAGGGCTCGACCTCAAGGGTA 37105 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATCGTG 48770 || || || ||||| | ||||| || || ||||||||| || Sbjct 37106 ATGGTCTTACCCGTGAGGGTTTTGACGAAGATCTGCATCTTG 37147 >seq5576 Length=36905 Score = 93.3 bits (102), Expect = 3e-14 Identities = 153/221 (69%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || | ||||| || || ||| ||| || || |||||||| || || || | || Sbjct 18777 AGTCGGAGCACCAGGTGAAGAGTGGACTCCTTCTGGATATTGTAGTCCGACAGGGTACGG 18718 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || |||| |||||| ||||| || ||||| ||||| ||||||| || | ||| ||| Sbjct 18717 CCATCTTCCAGCTGCTTTCCGGCGAAGATCAGACGCTGCTGATCCGGAGGGATGCCTTCC 18658 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 || || |||||| || ||| | | | || || | ||| ||||| | || Sbjct 18657 TTATCCTGAATCTTGGCCTTCACATTTTCGATCGTGTCCGAGGGCTCGACCTCAAGAGTG 18598 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATCGT 48769 || || || || || | ||||| || |||||||||||||| Sbjct 18597 ATGGTCTTGCCGGTGAGTGTTTTCACGAAAATCTGCATCGT 18557 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380841153028002