Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20punctulatus_20[genbank_20GCA_5F000956255.1_202015-03-19] 20,774 sequences; 146,157,495 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq17361 127 2e-23 >seq17361 Length=8649 Score = 127 bits (140), Expect = 2e-23 Identities = 199/281 (71%), Gaps = 9/281 (3%) Strand=Plus/Plus Query 869180 CCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTTC 869239 || |||||||| ||||| |||||| || | || || ||||| |||||||||||| Sbjct 724 CCCTCGTCGCGCGAGATCAGCTCGTTGGAGAACGTCAGCCCCGGCATTAGGCCGCGCTTC 783 Query 869240 TTGAGCCAAAAGAT-GGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 869298 || ||||| ||||| | |||| || ||||| ||| || |||||||| ||||| || || Sbjct 784 TTCAGCCAGAAGATAGCCGCA-AAGCTGCCACTGAAGAAAATGCCCTCAACGGCAGCGAA 842 Query 869299 GCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCT--TGTTGATCCACTTCATCGCC 869356 | | | | ||||| | ||| | |||| || | || |||||| |||| |||| Sbjct 843 GGCAACCACACGCTCCCCGAAGTT-----GGCCTTCTTGCTGGAGATCCAGTTCAGCGCC 897 Query 869357 CAGTCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTT 869416 ||||||||||| ||| | || |||| | ||| ||||| ||| || || | ||| Sbjct 898 CAGTCGGCCTTCTTCTTGACGCACGGTAGCGTTTCGATCGCGTTGAACAGATACTCCCGC 957 Query 869417 TCGGCCGGGTCCTTGACATAGGTGTCGATCAGGAGCGAATA 869457 ||| |||||| | || ||||||||||| ||||| || Sbjct 958 TCGTTCGGGTCGCGTATGTACGTGTCGATCAGCAGCGAGTA 998 Score = 89.7 bits (98), Expect = 6e-12 Identities = 160/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 869635 GTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGGAC 869694 ||| | |||||| || || ||||| || ||||| ||| | |||| | ||| || || Sbjct 1008 GTGCACGTTCTCCATCGCAATCTGAAACCCGTAGAAGCAGCGGGCCTCCGTCACCTGCAC 1067 Query 869695 CTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAAAA 869754 ||||| |||| || | |||| |||||| ||||| ||||| ||||||||| || Sbjct 1068 CTCCTGGCTGAAGCGCTCCACCAGATTCTCGTTTACGATACCGTCCGAGGCGGCGAAGAA 1127 Query 869755 AGCCAGGACGTGCTTGATAAAGTGGCGCTCG-TCGTCGCTGAGCGACACCCAGTGGACGG 869813 || || |||||| ||| ||||| |||||| ||| ||||||| |||||| Sbjct 1128 GGCAAGTACGTGCGAGATGAAGTGACGCTCGCTCGGTT-TGAGCGATTCCCAGTCTTTCA 1186 Query 869814 TGTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCT 869864 |||| ||||||||||| || | ||||||| || || || |||| Sbjct 1187 TGTCCTTCGACAGGTCCACCTCTTCCACTGTCCAGAAGGAAGCTTCCGCCT 1237 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6105434388275358