Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20punctulatus_20[genbank_20GCA_5F000956255.1_202015-03-19] 20,774 sequences; 146,157,495 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq17361 136 6e-26 seq3577 89.7 8e-12 seq15509 86.0 1e-10 >seq17361 Length=8649 Score = 136 bits (150), Expect = 6e-26 Identities = 229/329 (70%), Gaps = 7/329 (2%) Strand=Plus/Plus Query 794341 CCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTTC 794400 || |||||||| ||||| |||||| || || || ||||| |||||||||||| Sbjct 724 CCCTCGTCGCGCGAGATCAGCTCGTTGGAGAACGTCAGCCCCGGCATTAGGCCGCGCTTC 783 Query 794401 TTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAG 794460 || ||||| ||||| || || ||||| ||| || |||||||| ||||| || ||| Sbjct 784 TTCAGCCAGAAGATAGCCGCAAAGCTGCCACTGAAGAAAATGCCCTCAACGGCAGCGAAG 843 Query 794461 CCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTT--TGTTGATCCACTTCATCGCCC 794518 | || | ||||| | |||| |||| |||| || |||||| |||| ||||| Sbjct 844 GCAACCACACGCTC-CCCGAAGT----TGGCCTTCTTGCTGGAGATCCAGTTCAGCGCCC 898 Query 794519 ACTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTCT 794578 | || ||||| ||| | || | || | ||| ||||| ||| || || | ||| || Sbjct 899 AGTCGGCCTTCTTCTTGACGCACGGTAGCGTTTCGATCGCGTTGAACAGATACTCCCGCT 958 Query 794579 CGACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTTT 794638 || |||||| | ||| |||||||| || |||||||| | || ||| | ||| | Sbjct 959 CGTTCGGGTCGCGTATGTACGTGTCGATCAGCAGCGAGTACATTTCACTGTGCACGTTCT 1018 Query 794639 CGATGGCGATCTGGAAGCCATAAAAGCAG 794667 | || || ||||| || || || |||||| Sbjct 1019 CCATCGCAATCTGAAACCCGTAGAAGCAG 1047 Score = 91.5 bits (100), Expect = 2e-12 Identities = 142/198 (72%), Gaps = 4/198 (2%) Strand=Plus/Plus Query 796141 AAACACCTGGCCTCGGGTACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGCC 796200 || || | |||||| | || || ||||||| ||||||| | |||| ||||| Sbjct 1042 AAGCAGCGGGCCTCCGTCACCTGCACCTCCTGGCTGAAGCGCTCCACCAGATTCTCGTTT 1101 Query 796201 ACGATGCCGTCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCG-TC 796259 ||||| ||||| ||||||||| ||||| || |||||| ||| |||||||||||| || Sbjct 1102 ACGATACCGTCCGAGGCGGCGAAGAAGGCAAGTACGTGCGAGATGAAGTGACGCTCGCTC 1161 Query 796260 GTCGCTGAGCGAGACCCAGTGGACCGTGT-CGGCGCCGAGGTCGACCTCCTCGGCGGTCC 796318 | ||||||| |||||| | ||| | || | ||||| ||||| || | |||| Sbjct 1162 G-GTTTGAGCGATTCCCAGTCTTTCATGTCCTTCGAC-AGGTCCACCTCTTCCACTGTCC 1219 Query 796319 AAAAGGAGGCCTCGGCCT 796336 | ||||| || || |||| Sbjct 1220 AGAAGGAAGCTTCCGCCT 1237 Score = 87.8 bits (96), Expect = 3e-11 Identities = 140/200 (70%), Gaps = 6/200 (3%) Strand=Plus/Plus Query 794019 AGCAGGCGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTTCATGCCGATG 794078 |||| || || |||||||| || |||||||| |||| || || ||||||||||| Sbjct 529 AGCAACCGATCCGCGACGAACTCGATGTACTGCGACATCAGTTCGCAGTTCATGCCGAGC 588 Query 794079 AGCGCCACGGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGGCCTCGATGATG 794138 | | || ||||||| || | ||| ||||| | ||||||| |||| || ||| |||| Sbjct 589 ATGTCGACCGGCAGCGCCTTGGTGAGGAACTCCTGCTCGATCACGACCGCATCGCGGATG 648 Query 794139 ATCTGCCTGGGCACG---TCGGACGACGGCTTGTCGACGAGCATCGTGTAGAGCAGGCAG 794195 |||| | | |||| || ||||| || | || || | | | | ||||||| Sbjct 649 ATCTCC---GTCACGCGCTCCTTAGACGGTTTCTGCACCAGATACCGGAACATCAGGCAG 705 Query 794196 GCAAAGTCGCAATGCAGACC 794215 |||||||| || ||||| || Sbjct 706 GCAAAGTCACAGTGCAGTCC 725 >seq3577 Length=7701 Score = 89.7 bits (98), Expect = 8e-12 Identities = 128/178 (72%), Gaps = 2/178 (1%) Strand=Plus/Plus Query 2070051 CGCCGCATGGTAGATCGTCTCAAAGATGGTGCGG-TTGAGGCGACGCGCGCCGGCGCTCT 2070109 |||| ||| |||||| || ||||| || ||| | ||||| |||| | |||| Sbjct 6346 CGCCCCATAGTAGATGGTTTCAAATATT-TGCTGATTGAGCTTTTGCGCTTGCTCACTCT 6404 Query 2070110 CCCACGGCAGGTCCATCATGGCAAACGCGTCGGCCAGGCCCTGCACGCCGACGCCCATCG 2070169 | |||| | | |||||| ||||| ||||||| ||||| || |||| ||| |||| Sbjct 6405 CGTACGGAAAGCCCATCAAAATGAACGCATCGGCCATACCCTGGACACCGATGCCGATCG 6464 Query 2070170 GCCGGTGGCGCAGGTTCGAGTGCCGGGCCTCGGGCACCGGGTAGTGGTTGATGTCGAT 2070227 | |||||||||| ||||||| | || || ||||||||||||| ||| | ||| || Sbjct 6465 GACGGTGGCGCATGTTCGAGCGTTTCGCTTCCGGCACCGGGTAGTAGTTCACGTCAAT 6522 >seq15509 Length=15336 Score = 86.0 bits (94), Expect = 1e-10 Identities = 91/118 (77%), Gaps = 3/118 (3%) Strand=Plus/Minus Query 653717 GAGGAAATGCCGTGGTCGCCGCGCGGGGGCGCCACGCCCGACATCGTCATCAACCCGCAC 653776 ||||| ||||||| || | | ||| || ||||||||||||| |||||||||||||| Sbjct 1072 GAGGATATGCCGT--TCAC-GTGCGAAGGTATCACGCCCGACATCATCATCAACCCGCAC 1016 Query 653777 GCCATCCCGTCGCGCATGACCATGGGCAAGATGATGGAGGCCCTCCTGGGCAAGGTGG 653834 ||||| ||||| || |||||||| ||| | |||| ||| | | | ||| ||| ||| Sbjct 1015 GCCATTCCGTCCCGTATGACCATCGGCCATTTGATCGAGTGCATTCAGGGGAAGCTGG 958 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7914036574869786