Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20punctulatus_20[genbank_20GCA_5F000956255.1_202015-03-19] 20,774 sequences; 146,157,495 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq5408 132 3e-26 seq5576 125 5e-24 seq3192 122 6e-23 >seq5408 Length=43822 Score = 132 bits (146), Expect = 3e-26 Identities = 159/214 (74%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || ||||| |||| ||| ||||||||| || || || || || || |||| |||| Sbjct 36932 AGCACCAGATGAAGGGTCGACTCCTTCTGGATATTGTAATCGGACAGCGTGCGGCCATCC 36991 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 ||||| ||||| ||||||||||| || || ||||| || |||| | ||||||||||| Sbjct 36992 TCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGATCCGGCGGGATACCCTCCTTGTCC 37051 Query 34886 TTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGG 34943 | || || || || || || |||| || || |||||| |||| ||| |||| Sbjct 37052 TGGATCTTCGCCTTCAC--ATTCTCGATCGTATCCGAGGGCTCGACCTCAAGGGTAATGG 37109 Query 34944 TCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 |||| ||||||||||| || || ||||||||||| Sbjct 37110 TCTTACCCGTGAGGGTTTTGACGAAGATCTGCAT 37143 >seq5576 Length=36905 Score = 125 bits (138), Expect = 5e-24 Identities = 155/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || |||||||||| ||| ||||||||| || || |||||||| ||| | || |||| Sbjct 18771 AGCACCAGGTGAAGAGTGGACTCCTTCTGGATATTGTAGTCCGACAGGGTACGGCCATCT 18712 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 ||||| |||||||||||||||||||| || ||||| || | || | || ||||| || Sbjct 18711 TCCAGCTGCTTTCCGGCGAAGATCAGACGCTGCTGATCCGGAGGGATGCCTTCCTTATCC 18652 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || || || | | |||| || || |||||| |||| || |||||| Sbjct 18651 TGAATCTTGGCCTTCACATTTTCGATCGTGTCCGAGGGCTCGACCTCAAGAGTGATGGTC 18592 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || || ||||| || || || || |||||||| Sbjct 18591 TTGCCGGTGAGTGTTTTCACGAAAATCTGCAT 18560 >seq3192 Length=14073 Score = 122 bits (134), Expect = 6e-23 Identities = 169/232 (73%), Gaps = 6/232 (3%) Strand=Plus/Minus Query 34748 TTTCCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCC 34807 ||||| || | || | ||||||| ||| | ||| ||||||||| ||||| ||||| Sbjct 230 TTTCCACCGCGCAGACGGAGGACCAAGTGCAAGGTCGACTCCTTCTGGATGTTGTAGTCG 171 Query 34808 GATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGC 34867 || || |||| | || ||||| ||||| |||||||||||||| || ||||| ||| | Sbjct 170 GACAGAGTGCGTCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGA 111 Query 34868 GGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCT--ATCG-ATTCATTGGCC 34924 || | ||||||||||| | || || ||||| || || |||| || | ||| | Sbjct 110 GGGATTCCCTCCTTGTCCTGGATCTTGGCCTTGAC--ATTCTCGATCGTATCCGATGG-C 54 Query 34925 TCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCA 34976 ||||| || | || |||||||| || || || ||||| || ||||||| || Sbjct 53 TCGACCTCCAGAGTGATGGTCTTGCCAGTCAGCGTCTTCACGAAGATCTCCA 2 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325610340079106