Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20punctulatus_20[genbank_20GCA_5F000956255.1_202015-03-19] 20,774 sequences; 146,157,495 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq17361 214 3e-49 seq4477 96.9 5e-14 >seq17361 Length=8649 Score = 214 bits (236), Expect = 3e-49 Identities = 346/486 (71%), Gaps = 14/486 (3%) Strand=Plus/Minus Query 1455796 AGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACCTCGGCGCCG-ACACGGTCCAC 1455854 |||| || || ||||| ||||| | || ||||| ||||| | || | ||| | || Sbjct 1237 AGGCGGAAGCTTCCTTCTGGACAGTGGAAGAGGTGGACCT-GTCGAAGGACATGAAAGAC 1179 Query 1455855 TGGGTGTCGCTGAGCGACGA-CGAGCGCCATTTCATCAAGCACGTCCTCGCCTTTTTTCG 1455913 |||| ||||| | ||| |||||| || |||||| |||||| || ||||| || || Sbjct 1178 TGGGAATCGCTCAAAC-CGAGCGAGCGTCACTTCATCTCGCACGTACTTGCCTTCTT-CG 1121 Query 1455914 CCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCCGCTTTATGAAAGAGGTCCAAT 1455973 ||||| || || ||||| |||||| |||| | ||||| | | ||||| || Sbjct 1120 CCGCCTCGGACGGTATCGTAAACGAGAATCTGGTGGAGCGCTTCAGCCAGGAGGTGCAGG 1061 Query 1455974 TGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCATCGAAAACATCCACTCTGAAA 1456033 || | ||||| || | || |||||||| ||||| || || || ||| | ||| ||||| Sbjct 1060 TGACGGAGGCCCGCTGCTTCTACGGGTTTCAGATTGCGATGGAGAACGTGCACAGTGAAA 1001 Query 1456034 CCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCGGTCGAGAAGGACCACCTCTTTC 1456093 |||||||| ||||||||||| ||| | |||||| |||| ||| | || || Sbjct 1000 TGTACTCGCTGCTGATCGACACGTACATACGCGACCCGAACGAGCGGGAGTATCTGTTCA 941 Query 1456094 GCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCCGACTGGGCGATGAAGTGGATCA 1456153 ||| ||||| ||| | |||| || | ||| ||||||||||||||| |||| |||||| Sbjct 940 ACGCGATCGAAACGCTACCGTGCGTCAAGAAGAAGGCCGACTGGGCGCTGAACTGGATCT 881 Query 1456154 ACA--AGGAGGGCCTCGACACTTTGCCGAGCGGCTCGTCGGCTTTGCCG-CGTCGAGGGC 1456210 || | || |||| |||| | ||||| | || | ||| || | ||| |||||| Sbjct 880 CCAGCAAGAAGGCC----AACTTCGGGGAGCGTGTGGTTGCCTTCGCTGCCGTTGAGGGC 825 Query 1456211 ATCTTTTTCTCGGGCAGTTTCTGC-GCCATCTTTTGGCTCAAGAAGCGCGGCCTCATGCC 1456269 || || ||| ||||| || ||| || ||||| ||||| |||||||||||||| ||||| Sbjct 824 ATTTTCTTCAGTGGCAGCTT-TGCGGCTATCTTCTGGCTGAAGAAGCGCGGCCTAATGCC 766 Query 1456270 CGGTCT 1456275 || || Sbjct 765 GGGGCT 760 >seq4477 Length=23598 Score = 96.9 bits (106), Expect = 5e-14 Identities = 200/295 (68%), Gaps = 2/295 (1%) Strand=Plus/Plus Query 332924 GTGTTGCAGGCCAGGGCAAACCGCGTCGTATTGGTATGCTTTTCCATGGTCGACCGGAGG 332983 |||||||| |||| ||||| || || || ||| | | ||||||| || || || Sbjct 16720 GTGTTGCATGCCAACGCAAAGCGGGTTGTGTTGCTGTAGATTTCCATTGTACGGCGTAGC 16779 Query 332984 GCCTGTTGGGCCGCCGGCGTGAGGCAGTCGGCCTCGTCGAGGATGATGATCTTGTGGCGC 333043 ||||| || || | ||| | || ||| ||||||||||| || | ||||||||||||| Sbjct 16780 GCCTGCTGAGCACCTTCCGTCATGCTGTCCGCCTCGTCGAGAATCACGATCTTGTGGCGC 16839 Query 333044 CCGTGCGGCAGATCAACCCTTTTCGAGGCGTGGTGTTTGATGATCTTGCGCACGACGTCC 333103 ||| | ||||| ||| | | | ||| |||||| | | || || || || Sbjct 16840 CCGCGTGGCAGCGTTACCTTCTGCTGGGCAAACATTTTGATCTTACTACGTACCACATCG 16899 Query 333104 ACGCCGCGCTCGTCCGACGCGTTGAGTTCGAGCACGGCCTCGTCG-GCGGCCGCACCCAA 333162 | || ||||||| || || || || || ||||||||||| ||| | || ||| | Sbjct 16900 ATACCACGCTCGTTTGAGGCATTCAGCTCAAGCACGGCCTC-TCGAAAGTTCGGACCGAG 16958 Query 333163 GAGGACGCGCGCCAGGCACGCGATGCTCGTGGTCTTGCCCGTGCCGGGCGGACCC 333217 |||| ||| ||||| || ||| |||| || || ||| || || |||||| Sbjct 16959 CAGGATGCGGGCCAGACAAAGGATAGTCGTAGTTTTACCCACTCCCGGTGGACCC 17013 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7175807509517388