Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20punctulatus_20[genbank_20GCA_5F000956255.1_202015-03-19] 20,774 sequences; 146,157,495 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq8981 120 3e-22 seq3192 104 2e-17 seq5576 100 3e-16 seq5408 95.1 1e-14 seq9632 91.5 1e-13 >seq8981 Length=25070 Score = 120 bits (132), Expect = 3e-22 Identities = 221/319 (69%), Gaps = 4/319 (1%) Strand=Plus/Minus Query 44103 CTAGAGACGGCCTCCACCCATGATCCTTTGTGGAACGCTGCCCAAACACAACTGTTGCGA 44162 || || || ||| ||| || ||| | |||||||||| ||||| || || | Sbjct 6682 CTGGAAACAGCCCACACGCACGATGATCTGTGGAACGCAGCCCAGCTGCAGCTAGTAAAG 6623 Query 44163 GAAGGTAAAATGCACCAATACATGCGTATGTATTGGTGCAAGAAGATATTGGAGTGGTCG 44222 || | || |||||| | | |||| ||||| ||| ||||| ||| | |||||| || Sbjct 6622 GAGGCCAAGATGCACGGGTTCCTGCGCATGTACTGGGCGAAGAAAATACTAGAGTGGACG 6563 Query 44223 GAAGATGCGCAAACC-GCGCTCGTTCATGCCATCTATCTGAACGACAAGTACAGTTTGGA 44281 || | || | | ||||||| ||||||||||||||||| |||||| |||| Sbjct 6562 AAA-ACGCCCGAGGAAGCGCTCGAAACGGCCATCTATCTGAACGATCGCTACAGTCTGGA 6504 Query 44282 CGGTCGCGACCCCAACGGGTACGTAGGATGTATGTGGTCCATTTGCGGTGTCCACGA-CA 44340 || ||||| || || || ||||| || || |||||||| || ||| |||| || || Sbjct 6503 TGGGCGCGATCCGAATGGATACGTCGGGTGCATGTGGTCGATCGCCGGCATCCATGATCA 6444 Query 44341 GGGCGTGGCGAGAGCTACCCATCTACGGCAAAGTGCGCTACATGAACTACAACGGTTGCG 44400 ||| ||| |||| ||| | |||||| | ||||||||||||||| |||| ||| Sbjct 6443 GGGA-TGGAAGGAGCGGGACATTTTTGGCAAAATTCGCTACATGAACTACGACGGCTGCA 6385 Query 44401 TCAGAAAGTTTGATGTAAA 44419 |||||||||| || || Sbjct 6384 AGCGAAAGTTTGACGTGAA 6366 >seq3192 Length=14073 Score = 104 bits (114), Expect = 2e-17 Identities = 163/232 (70%), Gaps = 6/232 (3%) Strand=Plus/Minus Query 35507 TTTCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCG 35566 |||||||| || | | | ||||| || || || |||||| || |||||||| ||| Sbjct 230 TTTCCACCGCGCAGACGGAGGACCAAGTGCAAGGTCGACTCCTTCTGGATGTTGTAGTCG 171 Query 35567 GCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAA 35626 | || || || |||| ||||||||||| || || || |||| |||||||| || | | Sbjct 170 GACAGAGTGCGTCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGA 111 Query 35627 GGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGAT--- 35683 || | | |||||||||| |||||| ||| | | | | | ||| || |||| Sbjct 110 GGGATTCCCTCCTTGTCCTGGATCTTGGCCTTGACATTCTCGATCGTATC---CGATGGC 54 Query 35684 TCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCA 35735 || ||||||| ||||| || || || |||| || ||||| || |||| || Sbjct 53 TCGACCTCCAGAGTGATGGTCTTGCCAGTCAGCGTCTTCACGAAGATCTCCA 2 >seq5576 Length=36905 Score = 100 bits (110), Expect = 3e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 35507 TTTCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCG 35566 || |||||||| | | | ||||| || | || |||||| || || ||||| || Sbjct 18789 TTACCACCACGGAGTCGGAGCACCAGGTGAAGAGTGGACTCCTTCTGGATATTGTAGTCC 18730 Query 35567 GCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAA 35626 | || ||| || | || ||||||||||| || || || |||| |||||||| |||| | Sbjct 18729 GACAGGGTACGGCCATCTTCCAGCTGCTTTCCGGCGAAGATCAGACGCTGCTGATCCGGA 18670 Query 35627 GGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCC 35686 || | || ||||| ||| ||||| ||||| | || | | |||||| | || Sbjct 18669 GGGATGCCTTCCTTATCCTGAATCTTGGCCTTCACATTTTCGATCGTGTCCGAGGGCTCG 18610 Query 35687 ACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 ||||| | ||||| || || || || | |||||||| || |||||||| Sbjct 18609 ACCTCAAGAGTGATGGTCTTGCCGGTGAGTGTTTTCACGAAAATCTGCAT 18560 >seq5408 Length=43822 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 35527 CACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTC 35586 ||||| ||| | || |||||| || || |||||||||| || || || | || || Sbjct 36934 CACCAGATGAAGGGTCGACTCCTTCTGGATATTGTAATCGGACAGCGTGCGGCCATCCTC 36993 Query 35587 CAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCAT 35646 ||||||||| || || || || | |||||||| |||| || | | |||||||||| Sbjct 36994 CAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGATCCGGCGGGATACCCTCCTTGTCCTG 37053 Query 35647 GATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTT 35706 |||||| ||||| | | | | ||| || | || ||||| | || || || || Sbjct 37054 GATCTTCGCCTTCACATTCTCGATCGTATCCGAGGGCTCGACCTCAAGGGTAATGGTCTT 37113 Query 35707 ACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 |||||| | ||||| || || |||||||| Sbjct 37114 ACCCGTGAGGGTTTTGACGAAGATCTGCAT 37143 >seq9632 Length=10527 Score = 91.5 bits (100), Expect = 1e-13 Identities = 168/242 (69%), Gaps = 6/242 (2%) Strand=Plus/Plus Query 41194 TGCGCGACACGATCACCCTTCATCACCACAAAGTCCACGTCGTTGTTGTTCACCATCACT 41253 ||||| | ||||||||||||| ||||||| || |||| ||| || ||| | || ||| Sbjct 9235 TGCGCAATACGATCACCCTTCTTCACCACGAAATCCATCTCGGAGTGGTTGAACAGCACA 9294 Query 41254 ATGCCCACGTTGCCCGTGTAGTCGGGATCGATGACGCCAGCAGCAATGTCGATCTTGTGC 41313 | || ||||| ||| |||||| || | ||| || || | | ||||| || Sbjct 9295 ACACCAACGTTTCCCCGGTAGTCCTCGTCAACGACACCTGCCCCCACATCGATGAAGTTT 9354 Query 41314 TTCAACGCCAGCCCCGATCGGGGCGCGATCCTACCGTAACAATCTTTGGGCAGCTGCAGA 41373 |||| ||| ||||| || || ||||| | | |||||||| ||| || | ||||| Sbjct 9355 TTCACCGCTAGCCCGGACCGTGGCGCCACACGCCCGTAACAGCCTTCCGGTACCTGCACC 9414 Query 41374 GCAATGTCCGTCTT---GATCAGCGTGCGGTCGTGGCGCGGAACGATGTAGTCGTAGGCG 41430 ||||| ||| | || | || ||| ||| |||| || || |||||||||||||| Sbjct 9415 TGGATGTCGGTCATTACGAGCTGCTTGC-CTCG-GGCG-GGTACCGTGTAGTCGTAGGCG 9471 Query 41431 CT 41432 || Sbjct 9472 CT 9473 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450676540171920