Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20punctulatus_20[genbank_20GCA_5F000956255.1_202015-03-19] 20,774 sequences; 146,157,495 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq4838 100 2e-16 >seq4838 Length=6282 Score = 100 bits (110), Expect = 2e-16 Identities = 233/346 (67%), Gaps = 14/346 (4%) Strand=Plus/Minus Query 40865 AGGTGATCTTGGTCCTGTTTATGGATTTCAGTCGCGACATTTTGGAGCAAAATATGACAC 40924 ||||||| | || ||||| || || ||||| | |||||| ||||| |||||||| | || Sbjct 812 AGGTGATTTGGGGCCTGTGTACGGTTTTCAATGGCGACACTTTGGGGCAAAATACAAAAC 753 Query 40925 TATGTACTCTGATTATACCAATA---AAGGAATGGATCAA-TTACAGTGCGTTATAGATA 40980 || | ||| || || | |||| || || ||| || ||| | || || || | Sbjct 752 ---GTGCCATGACGATTACACTGGGCAAGGCATAGACCAACTTGCAGAG-GTAATCGACA 697 Query 40981 CGATTAAATCCGATCC---CGATAGCCGACGTATAATATTGTGCGCGTGGAACCCAACGG 41037 ||||||| | | || |||| | ||| || || || |||| ||||| || || | Sbjct 696 AGATTAAAAACAACCCGTACGATCGTCGA---ATCATCATGAGCGCCTGGAATCCGACCG 640 Query 41038 ACGTACATTTGATGGCATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTGCAATG 41097 | | | ||||| | ||||||||||||| || ||| |||| ||| || | Sbjct 639 ATATCCCCAATATGGCTCTTCCACCTTGTCATTGCTTGGCTCAATTTTTTGTTGATAACG 580 Query 41098 GTGAACTGTCATGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTA 41157 | ||| | ||||| || |||||||| |||| | ||| |||| | || || || || | Sbjct 579 GAGAATTATCATGCCAGATGTATCAACGATCGGCCGACGTGGGCTTGGGTGTACCATTCA 520 Query 41158 ACATAGCGAGTTATGCTCTGCTCACGTATATGATTGCACACGTTAC 41203 |||| || || || | ||||| || ||||||| || || || || Sbjct 519 ACATCGCAAGCTACTCGCTGCTTACCCATATGATCGCGCATGTCAC 474 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397355370847870