Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20punctulatus_20[genbank_20GCA_5F000956255.1_202015-03-19] 20,774 sequences; 146,157,495 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq5576 187 8e-42 seq15710 93.3 1e-13 seq18798 91.5 4e-13 seq12520 91.5 4e-13 seq4366 87.8 5e-12 >seq5576 Length=36905 Score = 187 bits (206), Expect = 8e-42 Identities = 181/233 (78%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 140505 TACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAA 140564 ||| |||||||||| | || || || || |||||||| ||||| || || ||||| || Sbjct 18792 TACTTACCACCACGGAGTCGGAGCACCAGGTGAAGAGTGGACTCCTTCTGGATATTGTAG 18733 Query 140565 TCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCA 140624 || || | || || |||||||| || || ||||| || ||||| ||||| |||||||| Sbjct 18732 TCCGACAGGGTACGGCCATCTTCCAGCTGCTTTCCGGCGAAGATCAGACGCTGCTGATCC 18673 Query 140625 GGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGT 140684 ||||| || ||||| ||||||||||| || || || ||||| || |||| || || || Sbjct 18672 GGAGGGATGCCTTCCTTATCCTGAATCTTGGCCTTCACATTTTCGATCGTGTCCGAGGGC 18613 Query 140685 TCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || ||||| || | ||||| ||||| |||||||| || ||||||||||| Sbjct 18612 TCGACCTCAAGAGTGATGGTCTTGCCGGTGAGTGTTTTCACGAAAATCTGCAT 18560 >seq15710 Length=13447 Score = 93.3 bits (102), Expect = 1e-13 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 235889 GGGGGATGTAGATCAATTGGTAGATCGCTCGCTTTGCATGCGAGAGGTACCGGGATCAAA 235948 ||||||||||| ||| ||||||| ||||||||| ||||| |||||||||||||||| | Sbjct 5783 GGGGGATGTAGCTCAGATGGTAGAGCGCTCGCTTAGCATGTGAGAGGTACCGGGATCGAT 5724 Query 235949 ACCCAGCATCTCCA 235962 |||| ||||||||| Sbjct 5723 ACCCGGCATCTCCA 5710 >seq18798 Length=5268 Score = 91.5 bits (100), Expect = 4e-13 Identities = 67/78 (86%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 235885 TATAGGGGGATGTAGATCAATTGGTAGATCGCTCGCTTTGCATGCGAGAGGTACCGGGAT 235944 ||| ||||||||||| ||| ||||||| ||||||||| ||||| ||||||||| ||||| Sbjct 1614 TATCGGGGGATGTAGCTCAGATGGTAGAGCGCTCGCTTAGCATGTGAGAGGTACGGGGAT 1673 Query 235945 CAAAACCCAGCATCTCCA 235962 | | |||| ||||||||| Sbjct 1674 CGATACCCCGCATCTCCA 1691 >seq12520 Length=4401 Score = 91.5 bits (100), Expect = 4e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 235890 GGGGATGTAGATCAATTGGTAGATCGCTCGCTTTGCATGCGAGAGGTACCGGGATCAAAA 235949 |||||||||| ||| ||||||| ||||||||| ||||| |||||||||||||||| | | Sbjct 4081 GGGGATGTAGCTCAGATGGTAGAGCGCTCGCTTAGCATGTGAGAGGTACCGGGATCGATA 4140 Query 235950 CCCAGCATCTCCA 235962 ||| ||||||||| Sbjct 4141 CCCGGCATCTCCA 4153 >seq4366 Length=16914 Score = 87.8 bits (96), Expect = 5e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 235890 GGGGATGTAGATCAATTGGTAGATCGCTCGCTTTGCATGCGAGAGGTACCGGGATCAAAA 235949 |||||||||| ||| ||||||| ||||||||| ||||| |||||||||||||||| | | Sbjct 16842 GGGGATGTAGCTCAGATGGTAGAGCGCTCGCTTAGCATGTGAGAGGTACCGGGATCGATA 16901 Query 235950 CCCAGCATCTCCA 235962 ||| ||| ||||| Sbjct 16902 CCCGGCACCTCCA 16914 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1514851089471522