Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20punctulatus_20[genbank_20GCA_5F000956255.1_202015-03-19] 20,774 sequences; 146,157,495 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq3577 190 2e-43 seq1711 136 4e-27 seq15712 134 2e-26 >seq3577 Length=7701 Score = 190 bits (210), Expect = 2e-43 Identities = 527/792 (67%), Gaps = 26/792 (3%) Strand=Plus/Minus Query 53174 GAGACGCCTCAGTATCTTTTCATGCGCGTCGCCTTGGGTATCCACGGTGACGAC-TACAC 53232 |||| ||| ||| || | || ||||| |||||| | || |||||||| || ||| | | Sbjct 7470 GAGAGGCCGCAGCATATGTTGATGCGTGTCGCCATCGGCATCCACGGCGAGGACATTGAG 7411 Query 53233 GC-GTGTCCGTGAGACGTACGA----CTTAATGAGCCAAAAGTACTTTACGCACGCCACG 53287 || | | || |||||||| | ||| |||| |||||||| |||||| | Sbjct 7410 GCAGCGATCG--AGACGTACAATCTGCTTTCGGAGCGT----TACTTTACCCACGCCTCT 7357 Query 53288 CCAACCCTGTTCAACGCTGGTACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCG 53347 || ||| |||| || | || | | |||||| | ||| ||||| ||| || || Sbjct 7356 CCGACCATGTTTGCGGCGGCCACCCAGCGTCCTCAGCTTTCGTCTTGCTTTCTGCTGACG 7297 Query 53348 ATGAAGGATGACTCGATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCC 53407 ||| ||| || |||||||| |||||||| || | ||| |||| || |||||| Sbjct 7296 ATGTCGGACGATAGCATCGACGGTATCTACGATACATTGAAGCAGTGCGCATTGATCTCC 7237 Query 53408 AAGTGGTCGGGTGGTATCGGTATCCAC-TGCTCGAACGTCCGTGCGAACGGCACACCAAT 53466 || | | | ||||||||||| | | ||| | | |||||||||| || || || Sbjct 7236 AAATCGGCCGGTGGTATCGGGCTGAATGTGCACTG-CATCCGTGCGAAGGGAACGTACAT 7178 Query 53467 CAAGGGGACGAACGGCGTCGCCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACAC 53526 | || |||||||| | | | || | || || ||||| || || | ||||||||| Sbjct 7177 CTCCGGTACGAACGGTATTTCGAACGGGTTGGTACCGATGCTACGTGTGTACAACAACAC 7118 Query 53527 GGCCCGGTACGTCAACCAGGGTGGTGGGAAGCG-CAAGGGGTCGTTCGCCATCTACCTCG 53585 ||| |||||||| | ||||| ||| ||||| | ||| | |||| || |||||||||| Sbjct 7117 GGCACGGTACGTTGATCAGGGCGGTAATAAGCGGCCAGGCG-CGTTTGCTATCTACCTCG 7059 Query 53586 AGCCGTGGCACGCCGACATTATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAG 53645 | |||||||||| || | | |||||||| || ||| || || | || | Sbjct 7058 AACCGTGGCACGGTGATGTGTTTGAGTTTCTGGATCTGAAGAAAAACACCGGCAAGGAGG 6999 Query 53646 AGATGCGCTGCCGTGACCTGTT-TACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAG 53704 || | ||| || ||| |||| ||| ||||| ||||| ||||| || |||||| | Sbjct 6998 AGGTTCGCGCTCGCGACATGTTCTAC-GCTCTCTGGATACCGGATCTGTTCATGAAGCGT 6940 Query 53705 GTGGAGAAGGACGAGGAGTGGTACCTGATGTGCCCGAACGAGTGCCCCGGCCTCCAGGGT 53764 |||||| | | || |||| ||||||||||| |||| || ||||| | | | Sbjct 6939 GTGGAGGCGAATGAAATGTGGAGTTTGATGTGCCCGCACGACTGTCCCGGATTGGCCGAT 6880 Query 53765 GTCTACGGTGAGGAGTTTAACGAGATGTA-TCGG---ACGTACGCAGTTCAGGGCCGCTA 53820 | || || ||||| | || |||| ||| ||| | |||| || | || | Sbjct 6879 TCGTGGGGCGAAGAGTTCGAGAAGCTGTACACGGGTTACG-AGGCAG---AGTGTCGGTT 6824 Query 53821 CAAGAAGAAGGTCAAGGCGCGTGAGGTATGGGATGCAATCCTCAAGAGCCAGGTGGAGAC 53880 | | || ||||||| || | ||| ||| ||| || || |||||||| || Sbjct 6823 TATACGTCAAGTGAAGGCGCAAGATCTGTGGTTTGCGATCATCGAGTCACAGGTGGAAAC 6764 Query 53881 GGGAACGCCGTACATGTGCTACAAGGATTCGGTCAACGAGAAGAGCAACCAGAAGAACAT 53940 ||| ||||||||| ||||||||| || ||| || ||||||||| | ||||| Sbjct 6763 GGGCGTACCGTACATGCTGTACAAGGATGCGTGCAATCGCAAAAGCAACCAGCAAAACAT 6704 Query 53941 CGGCGTCATCAA 53952 |||| |||||| Sbjct 6703 CGGCACCATCAA 6692 Score = 100 bits (110), Expect = 3e-16 Identities = 294/447 (66%), Gaps = 11/447 (2%) Strand=Plus/Minus Query 55484 CGCAACTCCCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATGGGCAAC 55543 || ||||| ||||| | || || |||||||| || ||||| ||||| || |||||||| Sbjct 6183 CGTAACTCACTGCTGCTAGCACCGATGCCAACAGCTTCGACTGCTCAAATATTGGGCAAC 6124 Query 55544 AACGAGGCGTTCGAGCCGTACACGACCAACATCTACCTGCGCCGGACCCTAGCAGGTGAG 55603 |||||| | ||||||||||||||| | ||| ||||| || || || | || ||| Sbjct 6123 AACGAGTCTTTCGAGCCGTACACGTCGAACGTCTACAACCGACGAGTGCTTTCGGGCGAG 6064 Query 55604 TTTGTCATGATCAACAAGCACCTCGTCAAGGACCTGCAGAAGATCAACAAGTGGAACCCG 55663 ||| | | ||| | || || ||||||||||| | | |||| || Sbjct 6063 TTTCAGGTTGTGAACCATCATCTGATCAAGGACCTGACCGCGCACGGGCTGTGGGACGAT 6004 Query 55664 CAGATCAAGACGGATATTGTGCGGAACGGGGGGTCCGTCCAGAATCTGGAG---ATTCCT 55720 | || |||| || || | || || || ||||||| | ||| || || Sbjct 6003 GAAATGAAGAACACAATCCTGGCGCACAACGGATCGATCCAGAAGATTGAGAAAATACCA 5944 Query 55721 CTG--CGT-CTCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAGAGTCTGATT 55777 | ||| | | || | ||| ||||| ||||||||| | || | || Sbjct 5943 AAGGACGTGCGC---GATCTGTACAAAACGGTTTGGGAGATTTCGGTCAAAACGTGCATC 5887 Query 55778 GACATGAGTGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCATG 55837 | ||| || |||||||| |||| ||||||||||||||| || | ||||| | || Sbjct 5886 CAAATGGCGGCCGATCGTGGAGCGTTCATCGACCAGTCCCAATCGTTCAACATACACGTG 5827 Query 55838 G-AGAATCCTTCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACT 55896 | ||| || | || || || | |||||| |||||| ||| |||||||| ||| | Sbjct 5826 GCCGAACCCAACTACGGTAAACTT-ACCTCGATCCACTTTCACGCGTGGAAGATGGGTTT 5768 Query 55897 CAAGACGGGTATGTACTATCTGCGGAC 55923 ||||| || ||||||||| |||| || Sbjct 5767 GAAGACTGGCATGTACTATTTGCGCAC 5741 >seq1711 Length=9628 Score = 136 bits (150), Expect = 4e-27 Identities = 238/342 (70%), Gaps = 11/342 (3%) Strand=Plus/Plus Query 124509 TGCGTCTCACCCGTGCCAATCACGAAATCTTCGGGAATCGACTGCTGCAACATAAGCCAC 124568 ||||| || ||||| |||| ||||||||||| || | |||||||| ||| | |||| Sbjct 4237 TGCGTTTCGCCCGTAGCAATGACGAAATCTTCCGGCTGCTTCTGCTGCATCATCAACCAC 4296 Query 124569 ATGGCTTGGACGTAGTCCTCTGCGTGCCCCCAGTCGCGCTTGGCATCCAGGTTTCCGAGC 124628 || |||| ||||||||| | ||||| |||||||||||||| | ||| || || || ||| Sbjct 4297 ATTGCTTCGACGTAGTCTTTCGCGTGGCCCCAGTCGCGCTTCGAATCGAGATTACCCAGC 4356 Query 124629 TCGATTGGCT-----TGGCCG-TCTTGTTCCACTCCGCCAAACCCAGTGTAATCTTGCGC 124682 |||| || |||||| | || | || || | | | || || ||||| Sbjct 4357 TCGACGCACTCCTGCTGGCCGAGCGAAATCTTCGCCACCGAGC---GAGTGATTTTGCGT 4413 Query 124683 GTCACAAACTCGGAACCGCGTCGCTCAGACTCGTGGTTGAACAGAATGCCAGTACACGCA 124742 |||||||| | ||| || || || ||||||||||| ||||| || | || ||| Sbjct 4414 GTCACAAAGTTCTCACCCCGCCGGGGCGATTCGTGGTTGAAGAGAATACCGTTGCAGGCA 4473 Query 124743 AACATCCCGTACGACTCGCGGTAGTTTTTCGTCATCCAATACCCAAAGAGCTT-GGACAC 124801 ||||| ||||| ||||| ||||| || ||||| || || | | || | |||| Sbjct 4474 AACATGTTGTACGCTTCGCGATAGTTGATCACTATCCAGTAGCCGTACATTTTCGCACAC 4533 Query 124802 GCCATAGGGGCTTCGGGGGTAGAATGGGGTGTTTTCATTTTG 124843 | | || || || || |||||||| || ||||| ||||| Sbjct 4534 G-CGTACGGTGAGCGCGGATAGAATGGAGTTTTTTCGTTTTG 4574 >seq15712 Length=12775 Score = 134 bits (148), Expect = 2e-26 Identities = 281/417 (67%), Gaps = 9/417 (2%) Strand=Plus/Plus Query 152742 CAGCTTCGGCCAGTACACGTGGAACATGTTGAGGACCAAGCCCTTGATGTGCGATCCGTC 152801 ||||| |||||||| | ||||| | ||| | || | |||||||||||||| || || Sbjct 4122 CAGCTCCGGCCAGTTCGTGTGGATGAAGTTTATGAGTAGCCCCTTGATGTGCGACCCATC 4181 Query 152802 AAGATCCGCGTCGGTCATGATCATCAGACGACCGTAGCGCAGG----TCACGTAGTGACC 152857 ||||| || ||||||||||||| ||||| ||||| ||| | || Sbjct 4182 CTGATCCTGATCCGTCATGATCATCACCTTGCCGTACCGCAGCGTCTTCAGATCGTCCGT 4241 Query 152858 CGT---AGACCTTTCCATGT--TGAAGCCCGAGGATCTTTTTGAGGTTGGAAAATTCCTC 152912 ||| | || | | | ||| || |||||||||||||| | |||||| | |||| | Sbjct 4242 CGTCAGATACTTCTTCTTGTACTGCAGCCCGAGGATCTTGATCAGGTTGTTGATTTCCGC 4301 Query 152913 ATTATCGGTCACCTGTTTCACCGTGGCATCCCGAACATTGCGCGGCTTTCCCCGGAGTGG 152972 || || | ||| || || || || || || || || |||| || || || || Sbjct 4302 GTTCTCCAGGATCTGCTTGTGGGTCGCTTCGCGCACGTTCAGCAGCTTACCGCGCAGCGG 4361 Query 152973 AAACACGCCGAACGCGTTGCGGCCTACAACGCTCAGACCGGCAATAGCAAGGGCTTTCGC 153032 |||||| ||| ||| || ||| || || || | ||| || | | || | | ||| || Sbjct 4362 AAACACACCGTACGTGTCGCGACCGACCACCCCCAGCCCCGACACGGCCAACGTTTTGGC 4421 Query 153033 CGAGTCACCCTCGGTGATAATAAGCGTACAGTCGTGAGACCGATGAGTACCGGCCCAGTT 153092 |||||| |||||||| | || |||||||||| | | || | | |||||| ||| Sbjct 4422 CGAGTCTCCCTCGGTCAGGATGAGCGTACAGTTGAGCGAATTGCGCGAACCGGCATCGTT 4481 Query 153093 GGCGTCGTCAAGCTTGGGGATTCCCGTGATCCTGCTTTTCTTAGAGCCGTCGGTTTT 153149 ||||| || ||||| ||||| ||| | ||| | ||||| |||||| ||||| Sbjct 4482 CGCGTCCTCCAGCTTCGGGATGCCCTTAATCTTCGACTTCTTCGAGCCGGACGTTTT 4538 Score = 127 bits (140), Expect = 2e-24 Identities = 310/459 (68%), Gaps = 18/459 (4%) Strand=Plus/Plus Query 151876 CCGGTACCGATGCCCTCTGCACCGTTGACCAGAATCATCGGCACAATAGGGGCGTAAAAC 151935 ||||||||||| || || |||||||||| ||| | ||||||||| || || || | Sbjct 3235 CCGGTACCGATACCGTCCGCACCGTTGATCAGCAGCATCGGCACGATCGGCAGATACCAA 3294 Query 151936 TCCGGCTCCACCTGTTGACCGTCATCCATCACGTATTTCAAAACGGAATTGTCAGCCGGA 151995 ||| || | | || ||| || | | ||| | || | | || ||| ||| Sbjct 3295 ATCGGTTCGATACGCTGGTTGTCCTCGAACTGGTACTCCAGCAGCGGATCGTCCAGCGGG 3354 Query 151996 TCGAATATCCGTCGAGTCATAG--GAC-TCAAACGCGTGAAGATGTATCGGGAGCTGGCC 152052 | ||| || | || |||| | ||| ||| |||||||||||| | | |||||| Sbjct 3355 TGGAAAATGCACCGCGTCAGGGCCGACATCAT---CGTGAAGATGTACCTAGGGCTGGCG 3411 Query 152053 GCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGTCCAGAGGGCTCGAGGAGGTTGAGG 152112 |||||||||||| | || |||||| |||||||| || || | || ||||||| | Sbjct 3412 CTATCCTTGCCACCCGTCAACCGCGTACCAAACTGACCGCCCGGATACAGCAGGTTGATG 3471 Query 152113 TTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACAATCGTGCCCTGCAGACTCGCT--T 152170 |||||| ||| ||| | ||||| |||| || | ||||| | ||||| || | Sbjct 3472 TTGTTGCTGCCGACGTAGTTCTGCGCCAGGTTGATGATCGT--CGAGCAGAGCGACTGCT 3529 Query 152171 CACCGTGGTGATACGCCGTCTGCTCCGCGATGTATCCCGCCAACTGCGCCACCTTCATGT 152230 | ||||| || || || | | ||||| | | ||||||||||| |||||||||| | Sbjct 3530 CGCCGTGATGGTAAGCGGACATTTCCGCCACCGAACCCGCCAACTGGGCCACCTTCACCT 3589 Query 152231 C-CG-TCGTCAGGTTCTTCTTGAGACAGGCGTAA--ATCACCTTGCGCTGGGATGGTTTC 152286 | || | ||| ||| ||||| || ||||| | |||||| |||||| || ||| Sbjct 3590 CGCGCTTGTC--GTTACGCTTGAAGCA--CGTAAACAGCACCTTCCGCTGGCCCGGCTTC 3645 Query 152287 AAACCGTCCACCACGTGAGGAATCGAACGCTTGATGTCC 152325 | ||||||| || | || ||||| ||| | ||||| Sbjct 3646 AGCCCGTCCAGCATGCACGGGATCGAGCGCACGTTGTCC 3684 Score = 122 bits (134), Expect = 1e-22 Identities = 276/411 (67%), Gaps = 17/411 (4%) Strand=Plus/Plus Query 117977 AGCTGAGGCCAGTACACGTGGATCATGTTCAGCACGAGCCCCTTGATATGGGAACCGTCC 118036 |||| ||||||| | |||||| | ||| | | ||||||||||| || || || ||| Sbjct 4123 AGCTCCGGCCAGTTCGTGTGGATGAAGTTTATGAGTAGCCCCTTGATGTGCGACCCATCC 4182 Query 118037 AGATCCGCATCGGTCATGATCATCAGGCGGCCGTACCGTAAA-TCTCTCAG-------GG 118088 ||||| ||| ||||||||||||| ||||||||| | ||| |||| | Sbjct 4183 TGATCCTGATCCGTCATGATCATCACCTTGCCGTACCGCAGCGTCT-TCAGATCGTCCGT 4241 Query 118089 AGTTATAAACCTTACCATGT--TGGAGCCCGAGGATCTTTTTAAGGTTGGAAAATTCCTC 118146 || | | || | | ||| || |||||||||||||| | |||||| | |||| | Sbjct 4242 CGTCAGATACTTCTTCTTGTACTGCAGCCCGAGGATCTTGATCAGGTTGTTGATTTCCGC 4301 Query 118147 ATTTTCCGTCACCTGTTTTATGGTGGCGTCCCGAACGTTGCGCGGCTTACCCCGCAGTGG 118206 || ||| | ||| || ||| || || || ||||| || ||||||| ||||| || Sbjct 4302 GTTCTCCAGGATCTGCTTGTGGGTCGCTTCGCGCACGTTCAGCAGCTTACCGCGCAGCGG 4361 Query 118207 AAACACGCCAAACTTGTCACGGCCCACAACGCTCAAGCCGGCAATAGCAAGGGCCTTCGC 118266 |||||| || || |||| || || || || | || || | | || | | || || Sbjct 4362 AAACACACCGTACGTGTCGCGACCGACCACCCCCAGCCCCGACACGGCCAACGTTTTGGC 4421 Query 118267 CGAGTCACCCTCGGTAATAATAAGAGTGCACTCG---GTGCTGCGATGAGTACCGGCCCA 118323 |||||| |||||||| | || || || || | | | ||| | | |||||| Sbjct 4422 CGAGTCTCCCTCGGTCAGGATGAGCGTACAGTTGAGCGAATTGC---GCGAACCGGCATC 4478 Query 118324 ATTAGCATCATCCAGCTTCGGAACGCCCGTAATGCGCGACTTTTTGGACCC 118374 || || || ||||||||||| | |||| |||| |||||| || || || Sbjct 4479 GTTCGCGTCCTCCAGCTTCGGGATGCCCTTAATCTTCGACTTCTTCGAGCC 4529 Score = 113 bits (124), Expect = 5e-20 Identities = 301/456 (66%), Gaps = 8/456 (2%) Strand=Plus/Plus Query 117150 ACCCAGTTCCGATACCCTCTGCACCATTCATCAGAATCATCGGCACGACAGGAACGTAG- 117208 |||| || |||||||| || ||||| || ||||| | ||||||||||| || | || Sbjct 3233 ACCCGGTACCGATACCGTCCGCACCGTTGATCAGCAGCATCGGCACGATCGGCAGATACC 3292 Query 117209 AACTCAGGCTCCACCTGCAGACCGTCGTCCGTGAC---GTACTTGAGCACCGCATTGTCA 117265 || || || || | || | || |||| || ||||| |||| || || ||| Sbjct 3293 AAATC-GGTTCGATACGCTG---GTTGTCCTCGAACTGGTACTCCAGCAGCGGATCGTCC 3348 Query 117266 CTCGGATCGAATATGTTCTTGGTCCACGGTGCTAGGCGAGTGAAAATGTAACGAGAGCTT 117325 ||| | ||| ||| | ||| | | | ||||| ||||| | || ||| Sbjct 3349 AGCGGGTGGAAAATGCACCGCGTCAGGGCCGACATCATCGTGAAGATGTACCTAGGGCTG 3408 Query 117326 GCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGTCCACTCGGCTCCAAGAGGTTC 117385 || |||||||||||| | | |||||||| || || || | ||| | || ||||| Sbjct 3409 GCGCTATCCTTGCCACCCGTCAACCGCGTACCAAACTGACCGCCCGGATACAGCAGGTTG 3468 Query 117386 AGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACAATCGTACCTTGGAGGCTCGCC 117445 | ||||||| ||| || |||| || |||| ||||| ||||| ||| | | Sbjct 3469 ATGTTGTTGCTGCCGACGTAGTTCTGCGCCAGGTTGATGATCGTCGAGCAGAGCGACTGC 3528 Query 117446 TCACCATGGTGATACGCCGTCTGCTCCGCCACGTAGCCCGCCAGCTGAGCCACCTTCATG 117505 || || || || || || | | |||||||| | ||||||| ||| |||||||||| Sbjct 3529 TCGCCGTGATGGTAAGCGGACATTTCCGCCACCGAACCCGCCAACTGGGCCACCTTCACC 3588 Query 117506 TCTGACGTCAGGTTCTTCTTGAGGCAGGCATAAATCACCTTGCGCTGACTTGGCTTCAGA 117565 || | | ||| ||||| ||| | | | | |||||| ||||| | |||||||| Sbjct 3589 TCGCGCTTGTCGTTACGCTTGAAGCACGTAAACAGCACCTTCCGCTGGCCCGGCTTCAGC 3648 Query 117566 CCATCCGCCACGTGAGGGATCGAACGCTTGATGTCC 117601 || ||| || | |||||||| ||| | ||||| Sbjct 3649 CCGTCCAGCATGCACGGGATCGAGCGCACGTTGTCC 3684 Score = 86.0 bits (94), Expect = 7e-12 Identities = 86/112 (77%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 119064 TAAATTTCGAACTGAACACGTTGGCTAGCTTGGCACCGTATCCGTTCCGACCACCGGTCA 119123 |||| || | ||||| | |||| ||||| |||||||||||||| || |||||||||| Sbjct 5282 TAAACTTGGTGCTGAAGATGTTGCACAGCTTCGCACCGTATCCGTTACGGCCACCGGTCA 5341 Query 119124 CGCGCTGCTCCTCGTCGTTGTAGTTGGAGCTGGTCAAAAGGTGCCCAAAGAT 119175 | || |||||| ||||||||||| || ||| | || ||||| ||||| Sbjct 5342 CCTTCTCCTCCTCATCGTTGTAGTTCGACGAGGTGAGCAGATGCCCGAAGAT 5393 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547073901685200