Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20punctulatus_20[genbank_20GCA_5F000956255.1_202015-03-19] 20,774 sequences; 146,157,495 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq8981 167 2e-36 seq3192 132 4e-26 seq5408 122 8e-23 >seq8981 Length=25070 Score = 167 bits (184), Expect = 2e-36 Identities = 321/469 (68%), Gaps = 6/469 (1%) Strand=Plus/Minus Query 135308 GTGCGCCGCGAATTGGCGGACAATTTTTGTTATTATAACAAACATTATGATTGCATAGAA 135367 || ||||| ||| || ||||||| ||||||| | || ||| | || || | | | Sbjct 6820 GTACGCCGTGAACTGTCGGACAACTTTTGTTTCCACAATAAAAACTACGACAACCTGGCC 6761 Query 135368 GGTGC-TCCGGCATGGGCGCAACAAACTTTGCACGCTCACGCCTCTGATCGCAGAGACTT 135426 ||||| | || | ||||||| |||| | ||| |||| | ||| | | | Sbjct 6760 GGTGCGTACGAC-TGGGCGCGCAAAACGCTCGACGATCACCGCAAAGATAAGCGTGTGTA 6702 Query 135427 TTGTTACACGCGCGAGCAATGGGACCAAGCGTTGACGCATGACCCGTTGTGGAACGCGGC 135486 ||| |||||||| || | ||| ||| ||||| || |||||||||| || Sbjct 6701 TTGCTACACGCGGGAAGAGCTGGAAACAGCCCACACGCACGATGATCTGTGGAACGCAGC 6642 Query 135487 ACAACGGCAGCT--TAAGCGAGAAGGCAAAATGCACGGATTTATGCGCATGTATTGGGCA 135544 || | |||||| ||| ||| | ||| |||||||| || |||||||||| ||||| Sbjct 6641 CCAGCTGCAGCTAGTAAAGGAG--GCCAAGATGCACGGGTTCCTGCGCATGTACTGGGCG 6584 Query 135545 AAAAAGATATTGGAATGGTCTGCATCGCCTGCAGAGGCGCTACAACACGCAATATTTTTT 135604 || || ||| | || ||| | | |||| | || ||||| || || || | | | Sbjct 6583 AAGAAAATACTAGAGTGGACGAAAACGCCCGAGGAAGCGCTCGAAACGGCCATCTATCTG 6524 Query 135605 AATGATTACTACAGTTTAGATGGACGCGATTCAAATGGCTACGTAGGTTGTATGTGGTCT 135664 || ||| ||||||| | ||||| |||||| | ||||| ||||| || || |||||||| Sbjct 6523 AACGATCGCTACAGTCTGGATGGGCGCGATCCGAATGGATACGTCGGGTGCATGTGGTCG 6464 Query 135665 ATTTGCGGTGTACACGATCAAGGATGGAAGGAGCGCAAAGTGTTTGGCAAGATTCGCTAT 135724 || ||| | || ||||| |||||||||||||| | | |||||||| |||||||| Sbjct 6463 ATCGCCGGCATCCATGATCAGGGATGGAAGGAGCGGGACATTTTTGGCAAAATTCGCTAC 6404 Query 135725 ATGAACTATGACGGTTGTACAAGAAAATTTAATGTAAATTTGTACGTGA 135773 |||||||| ||||| || | |||| ||| | || || || ||||| Sbjct 6403 ATGAACTACGACGGCTGCAAGCGAAAGTTTGACGTGAACGCGTTCGTGA 6355 >seq3192 Length=14073 Score = 132 bits (146), Expect = 4e-26 Identities = 165/226 (73%), Gaps = 0/226 (0%) Strand=Plus/Plus Query 26989 TGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCG 27048 || |||| || || || || ||||| |||||| | || ||||| || || || || || | Sbjct 2 TGGAGATCTTCGTGAAGACGCTGACTGGCAAGACCATCACTCTGGAGGTCGAGCCATCGG 61 Query 27049 ACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAAC 27108 | |||| |||| ||||| || || || ||||| || || || || || ||||| | Sbjct 62 ATACGATCGAGAATGTCAAGGCCAAGATCCAGGACAAGGAGGGAATCCCTCCAGATCAGC 121 Query 27109 AGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAACA 27168 ||||| | || | ||||||||| || |||| ||| | || | ||||| ||||||| Sbjct 122 AGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGACGCACTCTGTCCGACTACAACA 181 Query 27169 TTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 | || |||||||||||||| || ||||| | ||| |||| ||||| Sbjct 182 TCCAGAAGGAGTCGACCTTGCACTTGGTCCTCCGTCTGCGCGGTGG 227 >seq5408 Length=43822 Score = 122 bits (134), Expect = 8e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || ||||| || || || ||| | ||||| ||||| || || || || Sbjct 37143 ATGCAGATCTTCGTCAAAACCCTCACGGGTAAGACCATTACCCTTGAGGTCGAGCCCTCG 37084 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || |||| |||| || || || || || ||||| || || || || || ||||| Sbjct 37083 GATACGATCGAGAATGTGAAGGCGAAGATCCAGGACAAGGAGGGTATCCCGCCGGATCAG 37024 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | ||||||||| || |||| || | || | ||||||||||| Sbjct 37023 CAGCGTCTCATCTTCGCCGGCAAGCAGCTGGAGGATGGCCGCACGCTGTCCGATTACAAT 36964 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 || || |||||||||||| | ||| |||| | || |||| ||||| Sbjct 36963 ATCCAGAAGGAGTCGACCCTTCATCTGGTGCTTCGCCTGCGCGGTGG 36917 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434805462564480