Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20quadriannulatus_20[genbank_20GCA_5F000349065.1_202013- 03-28] 2,823 sequences; 283,828,998 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq890 102 8e-17 seq2001 100 3e-16 >seq890 Length=3078589 Score = 102 bits (112), Expect = 8e-17 Identities = 184/262 (70%), Gaps = 8/262 (3%) Strand=Plus/Plus Query 118936 TTCATGTATCGTATCTTTCCAAATACGGTACGCTCCTTCCATGCTCTG-TCGTGGAGTCC 118994 |||||||| || || || ||||| | ||||||||||| || ||| ||||||| || Sbjct 487646 TTCATGTACCGAATTTTGCCAAAGATTTCGCGCTCCTTCCA-GCCCTGATCGTGGATGCC 487704 Query 118995 TGCTACTGCCCATAGACATCCCACGTATCCGTTGGGATCTGTTCCGTCTA-ACTCGTACT 119053 || | | ||| | || || ||||| ||||| ||||| || || | ||| ||| Sbjct 487705 CGCGATCGACCACATGCAACCGACGTACCCGTTCGGATCGCGCCCATCCAGACT-GTAGC 487763 Query 119054 TATCGTTTAAGTAGATACAGACGCTTAACGCACTT--TCCGGAGTCTTACTCCATTCCAG 119111 |||||| | ||||| | || | | || ||| || || || || |||| ||||| Sbjct 487764 GATCGTTCAGATAGATC--GCCGTCTCAAGCGCTTCTTCGGGCGTTTTCGTCCACTCCAG 487821 Query 119112 TAtttttttAGCCCAGTACATACGTAAATACCCGTGCATTTTACCCTCGTTAATCATCTG 119171 || ||||| ||||||||||| || | | |||||||| || ||||| || | |||||| Sbjct 487822 GATCTTTTTGGCCCAGTACATGCGCAGGAAGCCGTGCATCTTGCCCTCCTTCACCATCTG 487881 Query 119172 AAGTTGTGCGGTGTTCCATAGA 119193 || || || | |||||| ||| Sbjct 487882 CAGCTGGGCCGAGTTCCACAGA 487903 >seq2001 Length=1904535 Score = 100 bits (110), Expect = 3e-16 Identities = 181/265 (68%), Gaps = 0/265 (0%) Strand=Plus/Minus Query 16472 ATATACGTATCAATCAGTAAACTGTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGA 16531 || ||||| || ||||| | |||||| || ||| | || || || || ||||| Sbjct 1559961 ATGTACGTGTCGATCAGCAGCGAGTACATCTCGCTGTGCACATTTTCCATCGCAATCTGG 1559902 Query 16532 AATCCATAGAAGCATCGAGCCTCCGCTATTTGTACTTCCACGTAAAATCGTTCCGCCAGG 16591 || || |||||||| || ||||||| | || || ||| | || |||||| |||| Sbjct 1559901 AAGCCGTAGAAGCAGCGCGCCTCCGTAACCTGCACCTCCTGGCTGAAGCGTTCCACCAGA 1559842 Query 16592 TTCTCATTCACGATACCGTCACTTGCAGCAAAAAACGCCAATATGTGCTTAATGAAATAT 16651 ||||| |||||||||||||| |||||||| || |||| | ||| ||||| | Sbjct 1559841 TTCTCGTTCACGATACCGTCGGACGCAGCAAAGAAGGCCAGCACGTGGGAGATGAAGTGG 1559782 Query 16652 TTTTCGTCAGATGTAAGAATATGCCAATCTTTTAAATCTTTGGATATATCCACTTCTTCT 16711 |||| | | | || | |||||| || | ||| ||||| | ||| |||||||| Sbjct 1559781 CGTTCGCTCGGTTTCAGCGACTCCCAATCCTTCATATCCTTGGACAGATCAACTTCTTCC 1559722 Query 16712 GGCGTCCAAAAGCTAGCCACTGCCT 16736 |||||| ||| ||| | |||| Sbjct 1559721 ACCGTCCAGAAGGAAGCTTCCGCCT 1559697 Score = 82.4 bits (90), Expect = 8e-11 Identities = 201/300 (67%), Gaps = 6/300 (2%) Strand=Plus/Minus Query 16036 ATCTGCTACAAATTCTATATATTGACACATTAAGTCGCAATTAATTCCTATAAGTCGTAC 16095 ||| || ||||| || || || || |||| | ||||| || || || | | || Sbjct 1560503 ATCGGCCACAAACTCAATGTACTGCGACATCAGATCGCAGTTCATGCCCAGCATATCCAC 1560444 Query 16096 CGGAAGAGCTTTTGTTAAAAATTGTTGTTCTATCACAACCGCTTCTTTAATGATATCGGT 16155 ||| || || || || | || | || || |||| ||||| || ||||| || || Sbjct 1560443 CGGCAGTGCCTTCGTCAGGAACTCCTGCTCGATCAGGACCGCATCGCGGATGATCTCCGT 1560384 Query 16156 GGCTCG-TGTTTCAGACGGTGTATGGTTTAGGTGTTTAAACATTAGACACGCGAAGTCGC 16214 | || | ||| ||||| | || || | || ||||| || || || ||||||| Sbjct 1560383 CACGCGCTCCTTC-GACGGCTTCTGCACCAGATACTTGAACATCAGGCAGGCAAAGTCGC 1560325 Query 16215 AATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTC 16274 | || || |||||||| | ||| || ||||| || || || | |||||||| | Sbjct 1560324 AGTGCAGCCCTTCGTCGCGCGAGATCAGCTCGTTCGAGAAGGTGAGTCCTGGCATCAGGC 1560265 Query 16275 CTCGTTTCTTTAACCAGAATATCGCAGCAAA--TGACCCCGAAAAGAATATACCCTCAAC 16332 | |||||||| | |||||| ||||| || || || | | ||| ||| ||||||||||| Sbjct 1560264 CACGTTTCTTCAGCCAGAAGATCGCGGCGAAGCTGCCGCTGAA--GAAGATACCCTCAAC 1560207 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511396353464360