Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20quadriannulatus_20[genbank_20GCA_5F000349065.1_202013- 03-28] 2,823 sequences; 283,828,998 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq2001 307 1e-78 seq113 136 4e-27 seq224 131 2e-25 >seq2001 Length=1904535 Score = 307 bits (340), Expect = 1e-78 Identities = 329/435 (76%), Gaps = 0/435 (0%) Strand=Plus/Plus Query 116946 TGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCT 117005 |||| || |||||||| ||| |||||||||| || |||||| || ||||||||| || Sbjct 1560094 TGTTCAATGCCATCGAAACGCTGCCGTGCGTGAAGCGGAAGGCGGACTGGGCGCTGAACT 1560153 Query 117006 GGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGG 117065 ||||| | ||| ||||| ||| |||||||| | ||||| ||||| || || |||| Sbjct 1560154 GGATCTCGAGCAAGAAGGCCAACTTTGGCGAGCGGGTCGTGGCATTCGCTGCGGTTGAGG 1560213 Query 117066 GCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGC 117125 | ||||||| ||||| |||||||| || || ||||| |||||||| ||||| |||| Sbjct 1560214 GTATCTTCTTCAGCGGCAGCTTCGCCGCGATCTTCTGGCTGAAGAAACGTGGCCTGATGC 1560273 Query 117126 CCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTG 117185 | || || || ||| |||||||| ||||| | ||||| || ||||| |||||||||| Sbjct 1560274 CAGGACTCACCTTCTCGAACGAGCTGATCTCGCGCGACGAAGGGCTGCACTGCGACTTTG 1560333 Query 117186 CCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACCGAGCGCGGCGCGCGTCAGGGAGATCG 117245 |||| || |||||||| || |||||||| ||| || |||||| | ||||||| Sbjct 1560334 CCTGCCTGATGTTCAAGTATCTGGTGCAGAAGCCGTCGAAGGAGCGCGTGACGGAGATCA 1560393 Query 117246 TCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCACCGAAGCGCTGCCGGTGCGTCTGC 117305 || ||| |||||| ||||||||| ||||| || | || ||||||||| | ||| Sbjct 1560394 TCCGCGATGCGGTCCTGATCGAGCAGGAGTTCCTGACGAAGGCACTGCCGGTGGATATGC 1560453 Query 117306 TGGGACTCAATTGCGAAACGATGTCGCAATACATCGAGTTCGTCGCCGACAGGCTGCTGC 117365 |||| | || ||||| ||||||||| ||||| ||||| || ||||| | |||||| Sbjct 1560454 TGGGCATGAACTGCGATCTGATGTCGCAGTACATTGAGTTTGTGGCCGATCGTTTGCTGC 1560513 Query 117366 TCGAGCTGGTCGGCG 117380 ||||||||| | ||| Sbjct 1560514 TCGAGCTGGGCTGCG 1560528 Score = 206 bits (228), Expect = 3e-48 Identities = 217/283 (77%), Gaps = 2/283 (1%) Strand=Plus/Plus Query 116655 AGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTGTCCAAGGACACGAGCGACT 116714 |||| || || || |||||||| || || || || || ||||||||||| | || || | Sbjct 1559697 AGGCGGAAGCTTCCTTCTGGACGGTGGAAGAAGTTGATCTGTCCAAGGATATGAAGGATT 1559756 Query 116715 GGGAG-CGCTTGAACGACAACGAGCGCCATTTCATCAAGCACGTGCTGGCCTTTTTCGCC 116773 ||||| ||| |||| | ||| ||||| |||||| |||||||||||||| || || Sbjct 1559757 GGGAGTCGC-TGAAACCGAGCGAACGCCACTTCATCTCCCACGTGCTGGCCTTCTTTGCT 1559815 Query 116774 GCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTTCGCTCAGGAGGTGCAGGTG 116833 || |||||| ||||| |||||||||||||| || || ||| |||||||||||||| Sbjct 1559816 GCGTCCGACGGTATCGTGAACGAGAATCTGGTGGAACGCTTCAGCCAGGAGGTGCAGGTT 1559875 Query 116834 GCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGAGAACGTGCACTCGGAAATG 116893 | |||||||| |||||||||||||| ||||| || ||||| || |||||| || ||| Sbjct 1559876 ACGGAGGCGCGCTGCTTCTACGGCTTCCAGATTGCGATGGAAAATGTGCACAGCGAGATG 1559935 Query 116894 TATTCGACCCTCATCGACACGTACGTGCGCTCTTCGGAGGAGA 116936 || ||| || |||||||||||| | ||| ||| | |||| Sbjct 1559936 TACTCGCTGCTGATCGACACGTACATCCGCGACTCGAAAGAGA 1559978 Score = 89.7 bits (98), Expect = 5e-13 Identities = 69/82 (84%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 116576 GAGCCGCTGCTGCGCGAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGAC 116635 || ||||||||| | || |||||||| ||||||||||| |||||||| || || |||||| Sbjct 1559528 GAACCGCTGCTGAGGGACAACCCCCGGCGGTTCGTGATCTTCCCCATCCAGTATCCGGAC 1559587 Query 116636 ATGTGGCGCATGTACAAAAAGG 116657 || |||| |||||||| |||| Sbjct 1559588 ATTTGGCAAATGTACAAGAAGG 1559609 >seq113 Length=3238079 Score = 136 bits (150), Expect = 4e-27 Identities = 168/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || ||||| || ||||| ||||| |||||||| || ||||| ||| | || ||||| || Sbjct 854704 AAGATGCAGATCTTCGTCAAAACCCTCACGGGTAAGACCATTACCCTTGAGGTCGAGCCC 854763 Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 | || | | | | | |||| || || | ||||| ||||| ||||| | || Sbjct 854764 TCGGATACGATCGAGAATGTGAAGGCGAAGATCCAGGACAAGGAGGGAATCCCGCCAGAT 854823 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 ||||| || || |||| ||| ||||| |||||||| || | ||||| || ||||||| Sbjct 854824 CAGCAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGATGGCCGCACGCTGTCCGACTAC 854883 Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||||||||||||| | || || ||||| ||| ||||| || | || || Sbjct 854884 AACATCCAGAAGGAGTCGACCCTTCATCTGGTGCTGCGCCTGCGCGGTGG 854933 Score = 136 bits (150), Expect = 4e-27 Identities = 162/220 (74%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 40685 GAAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAG 40744 |||| ||||| || ||||| ||||| ||||| ||||| |||||||| | || ||||| Sbjct 1949311 GAAACATGCAGATTTTCGTGAAAACACTCACCGGCAAGACCATCACACTTGAGGTCGAGC 1949252 Query 40745 CCACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGG 40804 | | |||| | | | | |||| ||| || | ||||| || ||||| ||| | | Sbjct 1949251 CTTCGGACACGATCGAGAATGTGAAGGCAAAGATCCAGGACAAGGAAGGCATTCCCCCAG 1949192 Query 40805 ACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACT 40864 | ||||| || || |||| ||| ||||| |||||||| || | ||||| ||| ||||| Sbjct 1949191 ATCAGCAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGATGGTCGCACTCTCTCCGACT 1949132 Query 40865 ACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 ||||||| |||||||| | || || ||||| ||| |||| Sbjct 1949131 ACAACATTCAGAAGGAATCGACCCTTCATCTGGTGCTGCG 1949092 >seq224 Length=3387546 Score = 131 bits (144), Expect = 2e-25 Identities = 159/214 (74%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 40686 AAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGC 40745 ||| ||||| || ||||| ||||| || || || || ||||||||| |||| |||||| | Sbjct 1794092 AAATATGCAGATTTTCGTGAAAACTCTGACCGGAAAGACCATCACCCTCGAGGTCGAACC 1794033 Query 40746 CACCGACA-GCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGG 40804 |||| | | || || | | |||| || || | ||||| ||||| ||||| | | Sbjct 1794032 ATCCGATACGATTGAGAATG-TGAAGGCGAAGATCCAGGACAAGGAGGGAATCCCGCCAG 1793974 Query 40805 ACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACT 40864 | ||||| || || |||| ||| || || |||||||| || | |||||||| |||| Sbjct 1793973 ATCAGCAGCGTCTGATCTTCGCTGGAAAGCAGCTGGAGGATGGCCGCACCCTGTCGGACT 1793914 Query 40865 ACAACATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 | ||||||||||||||| |||| || ||||| || Sbjct 1793913 ATAACATCCAGAAGGAGTCCACCCTTCATCTGGT 1793880 Score = 120 bits (132), Expect = 3e-22 Identities = 156/212 (74%), Gaps = 4/212 (2%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| ||||| || || || || |||||||| | || || || |||| | Sbjct 1793860 ATGCAGATTTTCGTGAAAACTCTGACCGGAAAGACCATCACTCTGGAGGTTGA-GCCATC 1793802 Query 40750 GACAGCG--TGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACC 40807 | || || |||| |||||| ||| || | ||||| ||||| ||||| | || | Sbjct 1793801 GGATACGATTGAGAACG-TCAAGGCAAAGATCCAGGACAAGGAGGGAATCCCGCCAGATC 1793743 Query 40808 AGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 40867 |||| || || |||| ||| || || |||||||| || | |||||||| ||||| | Sbjct 1793742 AGCAGCGTCTGATCTTCGCTGGAAAGCAGCTGGAAGATGGCCGCACCCTGTCGGACTATA 1793683 Query 40868 ACATCCAGAAGGAGGCCACGCTGCATCTAGTG 40899 ||||||||||||| |||| || ||||| ||| Sbjct 1793682 ACATCCAGAAGGAATCCACTCTTCATCTGGTG 1793651 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515201019202480