Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20quadriannulatus_20[genbank_20GCA_5F000349065.1_202013- 03-28] 2,823 sequences; 283,828,998 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq2381 174 1e-38 seq113 136 3e-27 seq224 120 3e-22 >seq2381 Length=1337761 Score = 174 bits (192), Expect = 1e-38 Identities = 496/758 (65%), Gaps = 36/758 (5%) Strand=Plus/Plus Query 133215 AGATACTGGTTGACCACTTGAAACTCGCCGGCGAGAACGCGTCTGAGATATACATTCGAC 133274 |||| ||||| ||||| || |||||||| | || ||||| || || || |||||| Sbjct 918832 AGATGATGGTTCACCACCTGGAACTCGCCCGACAGCACGCGCCTATTGTAAACGTTCGAC 918891 Query 133275 GTGAACGGTTCGAAAGATTCGTTGTTGCCGAGTATCTGCGCCGTCGTCGCCGTGGGCATG 133334 ||| |||| ||||| ||||| ||||||||||| || || ||||| | ||||| ||||| Sbjct 918892 GTGTACGGCTCGAACGATTCATTGTTGCCGAGAATTTGTGCCGTGGAAGCCGTCGGCATC 918951 Query 133335 TACGCCACCAACAAAGAGTTTCTTACGCCGTACTTGTTTATGTTGCACTGCAATTCGTTC 133394 |||| || || || || | | |||| ||| || || || ||| ||| | Sbjct 918952 GGGGCCAACAGCAGCGAATTGCGAATACCGTGTTTGGCGATCTTTTCCTTCAACTCGGCC 919011 Query 133395 CAGTCCCACAGATTGTTGGAATGATAGACGCCGTTCTCGTCGTCGTAGTTGTGAAAATGC 133454 |||| |||||||| || || | || | || | | | | ||| Sbjct 919012 CAGTTCCACAGAT--------------CCGTCGGT-TCCTTGTTCCACATCTCGTACTGC 919056 Query 133455 AAAATACCCCTGCTCACCGGACTGTCCGTGTACGATTCATAGGGTCCGTTGATTTTGGCC 133514 || || ||| |||||||||||||| || ||||| || || || || | |||| Sbjct 919057 AAGATGCCCTTGCTCACCGGACTGCCCTCGTACGTCTCGTACGGACCATCTCGAGCGGCC 919116 Query 133515 AGCTCGCAGCTAGCCTCCAAAGCGGCAAAGTAAATGGTTTCCGCGATTGAATAGTTGACG 133574 | ||| ||||| || |||| ||| | |||| || ||||| ||||| ||| | Sbjct 919117 AACTCACAGCTCGCTTCCAGCGCGCCGTAGTAGATAGTTTC-------GAATATTTGCTG 919169 Query 133575 A---ACCT----GGCATCGTCGCTATCGTAGGCGATGTCG-AGAAGAACAAACGCGTCGG 133626 | | || || || ||||| ||||| | ||| || | || | ||||| |||| Sbjct 919170 ATTTAGCTTTTGAGCCTCTTCGCTTTCGTACG-GATAGCGCATCAGGATGAACGCATCGG 919228 Query 133627 CCAAACCCTGTATGCCGACGCCGATGGGTCGATGTTTTTTATTGCTCCTCTCCGACTCGG 133686 ||| || || | ||||| ||||| || | || ||||| | || | ||| | Sbjct 919229 CCATGCCTTGCACGCCGATCCCGATCGGCCTGTGGCGCATATTGGAGCGCTTAGCCTCCG 919288 Query 133687 CCGTGGGATAGTGGTTGACGTCGATGATCTTGTTGAGATTGCGGACGATAATTTTAGTCA 133746 | |||||||| ||||| || ||||| ||||| |||||||| | | |||| | Sbjct 919289 GCACGGGATAGTAATTGACATCAATGATTTTGTTCAGATTGCGCGTCACTGTCTTAGCGA 919348 Query 133747 AATGTTTCAGCAAAACATAGTCAAATGTCTTGGCGTCGACGTCGACGCACTTGTTGACGG 133806 | |||||| || ||||| | || || ||| | || || |||| | || Sbjct 919349 CTTCCTTCAGCTTTGCAAAGTCATACGTTTT---GTCTTGCTTTACAAACATGTTCAAGG 919405 Query 133807 CAATACTGGCTAGATTACAAACGGCCGTCTCGTTC-TCGTCGCAATACTGGACGATCTCG 133865 | || ||| ||||| || || || ||| | | ||| || | |||| || ||||| Sbjct 919406 CGATCGAGGCCAGATTGCATACCGCTACCTCATCCTTCGACG-AGTACTCCACAATCTCA 919464 Query 133866 GCGCAGAGGTTGCTGCATTTGATGGTGCCCAAAtttttttGATTGCTAAAGTTATTGCAA 133925 | ||| | |||| |||||||||||||| | ||| | || || || ||||||| Sbjct 919465 GTGCACAAGTTGGAACATTTGATGGTGCCGATATTCTGCTGGTTACTTTTACGATTGCAA 919524 Query 133926 TGATCCTTGTATAGCATGTACGGCCCGCCGGTTTCGAC 133963 ||||||||| |||||||||||| |||||||||| || Sbjct 919525 GCATCCTTGTACAGCATGTACGGCACGCCGGTTTCCAC 919562 >seq113 Length=3238079 Score = 136 bits (150), Expect = 3e-27 Identities = 168/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 |||| || || | || || ||||| || | || || || || ||||||||||| ||| Sbjct 1949078 TACCACCACGGAGTCGCAGCACCAGATGAAGGGTCGATTCCTTCTGAATGTTGTAGTCGG 1949137 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 | |||||| |||||| ||||| || || ||| |||| |||||||||||||| || | Sbjct 1949138 AGAGAGTGCGACCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGG 1949197 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGA 118689 | ||||| |||||||| || ||| || || | |||| ||||||| ||||| Sbjct 1949198 GAATGCCTTCCTTGTCCTGGATCTTTGCCTTCACATTCTCGATCGTGTCCGAAGGCTCGA 1949257 Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 |||| | || | || |||||||| || ||||| || |||||||||||| Sbjct 1949258 CCTCAAGTGTGATGGTCTTGCCGGTGAGTGTTTTCACGAAAATCTGCATG 1949307 Score = 118 bits (130), Expect = 9e-22 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 118511 ACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCT 118570 ||| ||||| | | || ||||| || | || ||||| || || |||||||| ||| Sbjct 854934 ACCACCGCGCAGGCGCAGCACCAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGA 854875 Query 118571 CATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGG 118630 || ||||| |||||| ||||| || || ||| |||| |||||||||||||| || || Sbjct 854874 CAGCGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGCGG 854815 Query 118631 TATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGAC 118690 || ||||||||||| || || || || | |||| || |||| | |||||| Sbjct 854814 GATTCCCTCCTTGTCCTGGATCTTCGCCTTCACATTCTCGATCGTATCCGAGGGCTCGAC 854755 Query 118691 CTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||| | ||| | || || || || || ||||| || || |||||||| Sbjct 854754 CTCAAGGGTAATGGTCTTACCCGTGAGGGTTTTGACGAAGATCTGCAT 854707 >seq224 Length=3387546 Score = 120 bits (132), Expect = 3e-22 Identities = 147/198 (74%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || ||||| || || ||||| || || || ||||| |||||| ||||| |||||| Sbjct 1793892 GTGGACTCCTTCTGGATGTTATAGTCCGACAGGGTGCGGCCATCCTCCAGCTGCTTTCCA 1793951 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 ||| |||| |||||||||||||| || || || ||||||||||| || || || Sbjct 1793952 GCGAAGATCAGACGCTGCTGATCTGGCGGGATTCCCTCCTTGTCCTGGATCTTCGCCTTC 1794011 Query 118662 ACCTGTTCGACGGTGTCCG-TGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGT 118720 || | || | || || | || | |||||||||| ||| | || || ||||||||||| Sbjct 1794012 ACATTCTCAATCGTATCGGATGGT-TCGACCTCGAGGGTGATGGTCTTTCCGGTCAGAGT 1794070 Query 118721 TTTTACAAAAATCTGCAT 118738 ||| || ||||||||||| Sbjct 1794071 TTTCACGAAAATCTGCAT 1794088 Score = 109 bits (120), Expect = 5e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||||| || | || || || || || ||||| || || || ||||| ||| || Sbjct 1793651 CACCAGATGAAGAGTGGATTCCTTCTGGATGTTATAGTCCGACAGGGTGCGGCCATCTTC 1793710 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 ||||| ||||||||| |||| |||||||||||||| || || || ||||||||||| Sbjct 1793711 CAGCTGCTTTCCAGCGAAGATCAGACGCTGCTGATCTGGCGGGATTCCCTCCTTGTCCTG 1793770 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 || ||| || || | || | || |||| ||| ||||| | || | || || Sbjct 1793771 GATCTTTGCCTTGACGTTCTCAATCGTATCCGATGGCTCAACCTCCAGAGTGATGGTCTT 1793830 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 |||||||||||||| || ||||||||||| Sbjct 1793831 TCCGGTCAGAGTTTTCACGAAAATCTGCAT 1793860 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433815473929516