Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20quadriannulatus_20[genbank_20GCA_5F000349065.1_202013- 03-28] 2,823 sequences; 283,828,998 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq2381 383 2e-101 seq2001 104 3e-17 >seq2381 Length=1337761 Score = 383 bits (424), Expect = 2e-101 Identities = 1206/1853 (65%), Gaps = 28/1853 (2%) Strand=Plus/Plus Query 62067 GCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAA 62126 || || || ||||| ||||||||||| || ||||| | ||| | |||| ||||| ||| Sbjct 918523 GCTGGCTTGGTACGCAGATAGTACATGCCAGTTTTCAAACCCATCTTCCAGCCGTAGAAA 918582 Query 62127 TGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTT 62186 || || ||| || ||| ||| | || || || | || || || | ||||| Sbjct 918583 TGGATCGACGTCAGCTTGCCATAGTTTGGCTCCGCGACGTGAATGTTGAACGATTGCGAC 918642 Query 62187 TGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGCAATTTCC 62246 |||||||| || || || | ||||| |||||||| ||| ||| || | || ||| Sbjct 918643 TGATCGATAAACGCACCACGATCTGCGGCCATTTTGATGCACGTTTTCACCGAGATCTCC 918702 Query 62247 CAAATAGTTTTATAAAC-TCGCTTAATATCTTCTGGAAGGTTTGTATTCT---GAATGGA 62302 || | ||||| || | |||| ||| || | || | | | ||| | || || Sbjct 918703 CATACCGTTTTGTACAGGTCGCG-AATTTCCTGCGGTATAGCCGCAATCTTTTGGATCGA 918761 Query 62303 TCCACCATCTACCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAA 62362 |||| | || ||| ||||| || || || ||| | | | ||| || Sbjct 918762 TCCATTGTTGGACAGAATTTCGTTCTTCATGTCGAGATCCCACAGACCCATGTTGGTCAA 918821 Query 62363 AACTCTAAGGAGATGCGGGTTAACTACTTGGAATTCTCCAGACAATACTCTCCGAGTGTA 62422 | | || ||||| |||| || || ||||| || || |||| || | || | |||| Sbjct 918822 ATCCTGCAGAAGATGATGGTTCACCACCTGGAACTCGCCCGACAGCACGCGCCTATTGTA 918881 Query 62423 AATATTACTGGTATACGGTTCCACCGACTCATTATTTCCCAAAATTTGAGCAGTTGATGC 62482 || || || ||||| || | ||| ||||| || || | |||||| || || || || Sbjct 918882 AACGTTCGACGTGTACGGCTCGAACGATTCATTGTTGCCGAGAATTTGTGCCGTGGAAGC 918941 Query 62483 AGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGATTTTATCTTT 62542 |||||||| || |||| || | ||| | || ||||| | | ||| || || || Sbjct 918942 CGTCGGCATCGGGGCCAACAGCAGCGAATTGCGAATACCGTGTTTGGCGATCTTTTCCTT 919001 Query 62543 TAGATGTTCCCAATTCCAAAGATCCGACGGTACAACANNNNNNNNNNNATATTGTAGAAT 62602 | | |||| ||||| ||||||| |||| | || || | || Sbjct 919002 CAACTCGGCCCAGTTCCACAGATCCGTCGGTTCCTTGTTCCACATCTCGTACTGCAAGAT 919061 Query 62603 ACCGTTACTGGC-GTACGATCCTACATATGTATCATATGGTCCTTCCTTCTCAGCTAGTT 62661 || || || | | || ||| | || || || || || || || | || | | Sbjct 919062 GCCCTTGCTCACCGGACTGCCCT-CGTACGTCTCGTACGGACCATCTCGAGCGGCCAACT 919120 Query 62662 TACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCAAAGATCTTCTTATTTAGATCTT 62721 ||| ||||| || | || ||||| || || ||||| || || | || |||||| | || Sbjct 919121 CACAGCTCGCTTCCAGCGCGCCGTAGTAGATAGTTTCGAATATTTGCTGATTTAGCTTTT 919180 Query 62722 GTGCTTCCGGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAA 62781 | || || ||| || | ||||| | || || ||||| || || | ||||| | Sbjct 919181 GAGCCTCTTCGCTTTCGTACGGATAGCGCATCAGGATGAACGCATCGGCCATGCCTTGCA 919240 Query 62782 CACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAAT 62841 | || || ||||| || || || | | |||| ||| | ||| || || | ||||| | Sbjct 919241 CGCCGATCCCGATCGGCCTGTGGCGCATATTGGAGCGCTTAGCCTCCGGCACGGGATAGT 919300 Query 62842 AATTAATATCTATAATTTTATTGAGATTTCT-GACAATTACTTTGACCACATCCTTCAGT 62900 |||| | ||| || ||||| || ||||| | | || | ||| | | || |||||||| Sbjct 919301 AATTGACATCAATGATTTTGTTCAGATTGCGCGTCACTGTCTTAG-CGACTTCCTTCAGC 919359 Query 62901 TTGAGAAAATCAAA----TCGCCCATCTATTACAAACATGTTCAATGCAACAGATGCCAG 62956 || ||| ||| | | | | || |||||||||||||||| || | || ||||| Sbjct 919360 TTTGCAAAGTCATACGTTTTGTCTTGCT-TTACAAACATGTTCAAGGCGATCGAGGCCAG 919418 Query 62957 ATTACACACGGCTACCTCATTAGCATC--CGCATATTGTATTATCTCAGTGCAAAGATTA 63014 ||| || || |||||||||| | || || || | | ||||||||||| | || Sbjct 919419 ATTGCATACCGCTACCTCATC--CTTCGACGAGTACTCCACAATCTCAGTGCACAAGTTG 919476 Query 63015 CTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAA 63074 ||| ||||| || || | ||| || || ||||| || || || |||||||| || Sbjct 919477 GAACATTTGATGGTGCCGATATTCTGCTGGTTACTTTTACGATTGCAAGCATCCTTGTAC 919536 Query 63075 AGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGA 63134 || ||| | || || ||||| | || ||||| || ||||| ||| | | | Sbjct 919537 AGCATGTACGGCACGCCGGTTTCCACTTGCGATTCGATTATCGCAAACCACAGATCCTGC 919596 Query 63135 GCCTTTAT-TATAGATTTGTATCTCCTTTCTCTTTCGTATAGAGTATACAATCGTTCGAA 63193 ||||| | | | | | | | | ||| | ||||| || |||| ||||| Sbjct 919597 GCCTTCACCTGTCGCATAA-AGCGACCCTCTTTCTCGTACCCCGTGTACAGCTTCTCGAA 919655 Query 63194 CTCGTCTCCCCAAACATTGTCCAAT---CTAGGACATTCATCCGGACACATCAACGACCA 63250 ||| || ||||| ||||| || | ||||| || | ||| ||||||| ||| Sbjct 919656 CTCTTCGCCCCAGG---TGTCCGATAGCCCGGGACAATCGTGCGGGCACATCAGGCTCCA 919712 Query 63251 CTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAG 63310 | | ||| ||| ||| || | ||| || || || || ||||| || || ||| | Sbjct 919713 CATTTCGTTCGCCTCCACACGCTGCATGAACAGGTCCGGTATCCACAGTGCGTAAAACAT 919772 Query 63311 ATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAAT 63370 || | || | ||||| || || || || || || |||||||| ||| | | || Sbjct 919773 GTCCCGTGCGCGGACCTCCTCCTTGCCGGTGTTTTTCTTCAGATCGAGAAACTCGAATAT 919832 Query 63371 ATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTG 63430 ||| ||||||||| || | || ||||| | |||||||||| ||||| || ||||| Sbjct 919833 ATCGCCATGCCACGGCTCGAGATAGATGGCGAATGCTCCAGGCCGCTTGTTACCGCCCTG 919892 Query 63431 ATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGATAT 63490 ||| | ||| | || || || || || || | |||||| || | | ||||||||| || Sbjct 919893 ATCGACGTACCGTGCCGTATTGTTGTAGACGCGCAACATCGGCACCAGACCGTTTGAAAT 919952 Query 63491 ACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATATTACTAATTGAT-AGACCTA 63549 || || ||||||||||| || ||| | || |||||| | | | | || || | Sbjct 919953 CCCGTTCGTACCGGAGATGTACGTTCCCTTCGCGCGAATAC-AGTGCACGTTCAGTCCGA 920011 Query 63550 TTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATGCCTTCTA 63609 | || || ||| || || |||| || || | || | |||||| |||||||| || | Sbjct 920012 TGCCACCGGCCGACTTTGAAATTAGGGCACACTGCTTCAGCGTGTCGTAGATGCCCTCAA 920071 Query 63610 TGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGAGTAGTTCCCG 63669 ||||||| ||| |||| | | || || ||| || | ||| | || || ||| Sbjct 920072 TGCTATCTTCGGACATGGTCAACAGGAAGCAGGACGAAAGCTGGGGGCGCTGCGTAGCCG 920131 Query 63670 CATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCT 63729 | ||| | || || || ||||| ||||| | || || || |||||||| |||| Sbjct 920132 CCGCAAACATAGTTGGCGAGGCGTGGGTAAAGTAACGCTCGGACAGCAGATTGTAGGTCT 920191 Query 63730 CAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCT 63789 | || |||| || || ||| ||| || || | || || ||||| | |||||||| Sbjct 920192 CGATCGCTGCATCGATGTCCTCGCCATGGATGCCAATAGCAACGCGCATCAGCATGTGCT 920251 Query 63790 GAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAA 63849 | || | || || ||||| || || |||| |||||| ||| |||||| ||||||| Sbjct 920252 GGGGGCGCTCGACGATTTTTCCCTTGATCTTCAGCAAGTATGATCGTTCCAAGGTTTTAA 920311 Query 63850 AACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAATTGAGC 63902 | || ||||||||||| ||||| || ||||||||||| |||| || ||| Sbjct 920312 AGCCGAAATAGTTGTACCCGAAGTCCCGATCGTAAATAATGGCCGAGTTCAGC 920364 >seq2001 Length=1904535 Score = 104 bits (114), Expect = 3e-17 Identities = 180/259 (69%), Gaps = 7/259 (3%) Strand=Plus/Minus Query 33570 TTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTA 33629 || ||||||| || || || ||||||||||| || ||||| | || | ||||| Sbjct 1560349 TTGAACATCAGGCAGGCAAAGTCGCAGTGCAGCCCTTCGTCGCGCGAGATCAGCTCGTTC 1560290 Query 33630 GAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGAT 33689 || || |||||||| ||||| |||||||| || || ||||| || || | ||||| Sbjct 1560289 GAGAAGGTGAGTCCTGGCATCAGGCCACGTTTCTTCAGCCAGAAGATCGCGGCGAAGCTG 1560230 Query 33690 CCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCG 33749 ||| |||||||| || || || ||||| || || | | | ||| ||| | ||| Sbjct 1560229 CCGCTGAAGAAGATACCCTCAACCGCAGCGAATGCCACGACCCGCTCGCCAAAGTTGGC- 1560171 Query 33750 CTGTCATG-----TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCG 33804 || || || ||||| || | ||||| || |||||| || || || |||| || Sbjct 1560170 CT-TCTTGCTCGAGATCCAGTTCAGCGCCCAGTCCGCCTTCCGCTTCACGCACGGCAGCG 1560112 Query 33805 TTTCTATGGCATTAAAGAG 33823 |||| |||||||| || || Sbjct 1560111 TTTCGATGGCATTGAACAG 1560093 Score = 82.4 bits (90), Expect = 1e-10 Identities = 152/223 (68%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 33891 TTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTA 33950 ||||| || || ||||| || |||||||| || | ||||| |||| |||||| || Sbjct 1559919 TTTTCCATCGCAATCTGGAAGCCGTAGAAGCAGCGCGCCTCCGTAACCTGCACCTCCTGG 1559860 Query 33951 CAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCTGCAAAAAACGCCAAT 34010 | || ||||| | | ||| || ||||| || || || || ||||| || |||| Sbjct 1559859 CTGAAGCGTTCCACCAGATTCTCGTTCACGATACCGTCGGACGCAGCAAAGAAGGCCAGC 1559800 Query 34011 ACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTA 34070 || || || || | |||| ||| | || | |||||| || ||||| || Sbjct 1559799 ACGTGGGAGATGAAGTGGCGTTCGCTCGGTTTCAGCGACTCCCAATCCTTCATATCCTTG 1559740 Query 34071 GATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCT 34113 || | ||| ||||||||||| ||||| || || || || |||| Sbjct 1559739 GACAGATCAACTTCTTCCACCGTCCAGAAGGAAGCTTCCGCCT 1559697 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629795375311440