Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20quadriannulatus_20[genbank_20GCA_5F000349065.1_202013- 03-28] 2,823 sequences; 283,828,998 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq2381 383 2e-101 seq2001 107 3e-18 >seq2381 Length=1337761 Score = 383 bits (424), Expect = 2e-101 Identities = 1212/1855 (65%), Gaps = 34/1855 (2%) Strand=Plus/Plus Query 78739 GCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAGAAA 78798 || || || ||||| ||||||||||| || ||||| | ||| | |||| ||||||||| Sbjct 918523 GCTGGCTTGGTACGCAGATAGTACATGCCAGTTTTCAAACCCATCTTCCAGCCGTAGAAA 918582 Query 78799 TGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTT 78858 || || ||| || ||| ||| | || || || | || || || | ||||| Sbjct 918583 TGGATCGACGTCAGCTTGCCATAGTTTGGCTCCGCGACGTGAATGTTGAACGATTGCGAC 918642 Query 78859 TGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCC 78918 |||||||| || || || | ||||| |||||||| ||| ||| || | || ||| Sbjct 918643 TGATCGATAAACGCACCACGATCTGCGGCCATTTTGATGCACGTTTTCACCGAGATCTCC 918702 Query 78919 CAAATAGTTTTATAAAC-TCGCTTAATATCTTCTGGAAGGTTTGTATTCT---GAATGGA 78974 || | ||||| || | |||| ||| || | || | | | ||| | || || Sbjct 918703 CATACCGTTTTGTACAGGTCGCG-AATTTCCTGCGGTATAGCCGCAATCTTTTGGATCGA 918761 Query 78975 TCCACCATCTGCCATAATCCTATTCTTGATCTCTTCATTCCATAATTTTCTCTCGGTTAA 79034 |||| | | || ||| ||||| || || || ||| | | | ||| || Sbjct 918762 TCCATTGTTGGACAGAATTTCGTTCTTCATGTCGAGATCCCACAGACCCATGTTGGTCAA 918821 Query 79035 AACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTA 79094 | | || ||||| | || || || || || || || |||| || | || | |||| Sbjct 918822 ATCCTGCAGAAGATGATGGTTCACCACCTGGAACTCGCCCGACAGCACGCGCCTATTGTA 918881 Query 79095 AATATTACTGGTATATGGTTCCACCGATTCATTATTTCCCAAAATTTGAGCAGTTGATGC 79154 || || || || || || | ||||||||| || || | |||||| || || || || Sbjct 918882 AACGTTCGACGTGTACGGCTCGAACGATTCATTGTTGCCGAGAATTTGTGCCGTGGAAGC 918941 Query 79155 CGTTGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGATCTGATTTTATCTTT 79214 ||| ||||| || |||| || | ||| | || ||||| | ||| || || || Sbjct 918942 CGTCGGCATCGGGGCCAACAGCAGCGAATTGCGAATACCGTGTTTGGCGATCTTTTCCTT 919001 Query 79215 TAGAGATTCCCAATCCCAAAGATCAGACGGGACAACATTCCAAAGATCATATTGTAGAAT 79274 | |||| | ||| ||||| | ||| | ||||| | || || || | || Sbjct 919002 CAACTCGGCCCAGTTCCACAGATCCGTCGGTTCCTTGTTCCACATCTCGTACTGCAAGAT 919061 Query 79275 ACCGTTACT-AGCGTATGATCCTGTGTATGTTTCATAAGGTCCTTCCTTTTCGGCTAATT 79333 || || || | || | ||| ||| || || || || || || |||| || | Sbjct 919062 GCCCTTGCTCACCGGACTGCCCTC-GTACGTCTCGTACGGACCATCTCGAGCGGCCAACT 919120 Query 79334 CACAACTCGCCTCTAATGCTCCGTAATAAATGGTTTCGAAAATCTTCTTATTGAGATCTT 79393 |||| ||||| || | || ||||| || || |||||||| || | || ||| || | || Sbjct 919121 CACAGCTCGCTTCCAGCGCGCCGTAGTAGATAGTTTCGAATATTTGCTGATTTAGCTTTT 919180 Query 79394 GTGCTTCTAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAA 79453 | || ||| ||| || | ||||| | || || ||||| || || | ||||| | Sbjct 919181 GAGCCTCTTCGCTTTCGTACGGATAGCGCATCAGGATGAACGCATCGGCCATGCCTTGCA 919240 Query 79454 CACCAATACCGATAGGTCTATGTCTCTTATTAGAAATTTCAGCTTCTGGAATAGGATAAT 79513 | || || ||||| || || || | | |||| || | ||| || || | ||||| | Sbjct 919241 CGCCGATCCCGATCGGCCTGTGGCGCATATTGGAGCGCTTAGCCTCCGGCACGGGATAGT 919300 Query 79514 AATTAATATCTATAATTTTATTGAGATTCC---TGACTATTACTTTGACCACATCCTTTA 79570 |||| | ||| || ||||| || ||||| | | ||| | ||| | | || ||||| | Sbjct 919301 AATTGACATCAATGATTTTGTTCAGATTGCGCGTCACTGT--CTTAG-CGACTTCCTTCA 919357 Query 79571 GTTTGAGAAAATCAAA----TCGTCCATCTATTACAAACATGTTCAACGCGACAGATGCC 79626 | || ||| ||| | | ||| || |||||||||||||||| |||| || ||| Sbjct 919358 GCTTTGCAAAGTCATACGTTTTGTCTTGCT-TTACAAACATGTTCAAGGCGATCGAGGCC 919416 Query 79627 AGATTACAAACGGCTACCTCATTAGCATC--CGCATATTGTATTATTTCAGTGCAGAGGT 79684 ||||| || || |||||||||| | || || || | | || |||||||| | || Sbjct 919417 AGATTGCATACCGCTACCTCATC--CTTCGACGAGTACTCCACAATCTCAGTGCACAAGT 919474 Query 79685 TACTACACTTAATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTAT 79744 | ||| || ||||| || | ||| || || ||||| || || || |||||||| | Sbjct 919475 TGGAACATTTGATGGTGCCGATATTCTGCTGGTTACTTTTACGATTGCAAGCATCCTTGT 919534 Query 79745 AAAGAATGAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTC 79804 | || ||| |||| || ||||| | || ||||| || ||||| ||| | | Sbjct 919535 ACAGCATGTACGGCACGCCGGTTTCCACTTGCGATTCGATTATCGCAAACCACAGATCCT 919594 Query 79805 GAGCCTTTAT-TATAGACTTGTATCTCTTTTCTCTTTCGTATT--GTGTATATAATCGTT 79861 | ||||| | | | | | | | | ||| | ||||| ||||| | || | Sbjct 919595 GCGCCTTCACCTGTCG-CATAAAGCGACCCTCTTTCTCGTACCCCGTGTACAGCTTC--T 919651 Query 79862 CGAACTCGTCTCCCCAAACATCGTCTAATCCAGGACATTCGTCAGGACACATCAACGACC 79921 ||||||| || ||||| || || || ||||| |||| || ||||||| || Sbjct 919652 CGAACTCTTCGCCCCAGGTGTCCGATAGCCCGGGACAATCGTGCGGGCACATCAGGCTCC 919711 Query 79922 ACTCTCCATCATCCTTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATA 79981 || | | | ||| || || | ||| || || || || ||||| || || |||| | Sbjct 919712 ACATTTCGTTCGCCTCCACACGCTGCATGAACAGGTCCGGTATCCACAGTGCG-TAAA-A 919769 Query 79982 GATCTCTGGTTCTATG--CTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCAT 80039 || || || | | |||||| || || || || || || |||||||| ||| | | Sbjct 919770 CATGTCCCGTGCGCGGACCTCCTCCTTGCCGGTGTTTTTCTTCAGATCGAGAAACTCGAA 919829 Query 80040 AATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGTCGTTTGTTTCCTCC 80099 ||||| ||||||||| || | || ||||| | |||| || || ||||| || || Sbjct 919830 TATATCGCCATGCCACGGCTCGAGATAGATGGCGAATGCTCCAGGCCGCTTGTTACCGCC 919889 Query 80100 CTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGA 80159 |||||| | ||| | || || || || || || | |||||| || | | ||| || || Sbjct 919890 CTGATCGACGTACCGTGCCGTATTGTTGTAGACGCGCAACATCGGCACCAGACCGTTTGA 919949 Query 80160 TGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGAT-AGAC 80218 | || || || |||||||| || |||| | || |||||| | | | | || | Sbjct 919950 AATCCCGTTCGTACCGGAGATGTACGTTCCCTTCGCGCGAATAC-AGTGCACGTTCAGTC 920008 Query 80219 CTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCT 80278 | || || || ||| || || |||| || || | || | ||| || |||||||||| Sbjct 920009 CGATGCCACCGGCCGACTTTGAAATTAGGGCACACTGCTTCAGCGTGTCGTAGATGCCCT 920068 Query 80279 CTATGCTATCATCAATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTC 80338 | |||||||| || |||| | | || || ||| || | ||| | || || Sbjct 920069 CAATGCTATCTTCGGACATGGTCAACAGGAAGCAGGACGAAAGCTGGGGGCGCTGCGTAG 920128 Query 80339 CCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACG 80398 |||| ||| | || || || ||||| ||||| | || ||||| |||||||| | Sbjct 920129 CCGCCGCAAACATAGTTGGCGAGGCGTGGGTAAAGTAACGCTCGGACAGCAGATTGTAGG 920188 Query 80399 TCTCAATAGCTGATTCTATATCCCATTGATGAATTCCTACCGCGACACGCATTAACATGT 80458 |||| || |||| || || ||| ||| || || | || || ||||| | ||||| Sbjct 920189 TCTCGATCGCTGCATCGATGTCCTCGCCATGGATGCCAATAGCAACGCGCATCAGCATGT 920248 Query 80459 GCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTTTCCAAAGTTT 80518 |||| || | || ||||| || || || |||| |||||| ||| |||||| |||| Sbjct 920249 GCTGGGGGCGCTCGACGATTTTTCCCTTGATCTTCAGCAAGTATGATCGTTCCAAGGTTT 920308 Query 80519 TAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAG 80573 |||| || ||||||||||| ||||| || ||||||||||| ||||||| || Sbjct 920309 TAAAGCCGAAATAGTTGTACCCGAAGTCCCGATCGTAAATAATGGCCGAGTTCAG 920363 >seq2001 Length=1904535 Score = 107 bits (118), Expect = 3e-18 Identities = 183/261 (70%), Gaps = 11/261 (4%) Strand=Plus/Minus Query 49948 TTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTG 50007 || ||||||| || || || ||||||||||| || ||||| | || || ||||| Sbjct 1560349 TTGAACATCAGGCAGGCAAAGTCGCAGTGCAGCCCTTCGTCGCGCGAGATCAGCTCGTTC 1560290 Query 50008 GAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAA--TG 50065 || || |||||||| ||||| |||||||| || || ||||| || || | || || || Sbjct 1560289 GAGAAGGTGAGTCCTGGCATCAGGCCACGTTTCTTCAGCCAGAAGATCGCGGCGAAGCTG 1560230 Query 50066 ACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGG 50125 | | | |||||||| || || || || || || || || | | ||| ||| | ||| Sbjct 1560229 CCGCTG--AAGAAGATACCCTCAACCGCAGCGAATGCCACGACCCGCTCGCCAAAGTTGG 1560172 Query 50126 CGCTGTCATG-----TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCAT 50180 | || || || ||||| || | ||||| || |||||| || || || |||| Sbjct 1560171 C-CT-TCTTGCTCGAGATCCAGTTCAGCGCCCAGTCCGCCTTCCGCTTCACGCACGGCAG 1560114 Query 50181 CGTTTCTATGGCATTAAAGAG 50201 |||||| |||||||| || || Sbjct 1560113 CGTTTCGATGGCATTGAACAG 1560093 Score = 96.9 bits (106), Expect = 5e-15 Identities = 155/223 (70%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 50269 TTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTA 50328 ||||| || || ||||| || |||||||| || | ||||| |||| |||||| || Sbjct 1559919 TTTTCCATCGCAATCTGGAAGCCGTAGAAGCAGCGCGCCTCCGTAACCTGCACCTCCTGG 1559860 Query 50329 CAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAAT 50388 | || ||||| | | ||| || ||||| || ||||| || ||||| || |||| Sbjct 1559859 CTGAAGCGTTCCACCAGATTCTCGTTCACGATACCGTCGGACGCAGCAAAGAAGGCCAGC 1559800 Query 50389 ACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGTTTATTCCAATCATTGATATCTTTA 50448 || || || || || |||| | ||| | || | |||||| || ||||| || Sbjct 1559799 ACGTGGGAGATGAAGTGGCGTTCGCTCGGTTTCAGCGACTCCCAATCCTTCATATCCTTG 1559740 Query 50449 GATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCT 50491 || | ||| ||||||||||| ||||| || || || || |||| Sbjct 1559739 GACAGATCAACTTCTTCCACCGTCCAGAAGGAAGCTTCCGCCT 1559697 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718243454089720