Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20quadriannulatus_20[genbank_20GCA_5F000349065.1_202013- 03-28] 2,823 sequences; 283,828,998 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq2381 345 6e-90 seq2001 86.0 8e-12 >seq2381 Length=1337761 Score = 345 bits (382), Expect = 6e-90 Identities = 1220/1891 (65%), Gaps = 44/1891 (2%) Strand=Plus/Plus Query 70791 CTTGTCCAATGTAAACTGAATGGGAGAGGATGCGGCT---TTCGTACGTAGATAGTACAT 70847 |||||||| |||||||| || | | | ||||| || ||||| ||||||||||| Sbjct 918492 CTTGTCCACCGTAAACTGGATCGCATT---TACGGCTGGCTTGGTACGCAGATAGTACAT 918548 Query 70848 GCCTGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAGCT 70907 ||| ||||| | ||| | |||| ||||| ||||| || ||| || ||| |||| | Sbjct 918549 GCCAGTTTTCAAACCCATCTTCCAGCCGTAGAAATGGATCGACGTCAGCTTGCCATAGTT 918608 Query 70908 AGGATCGGCTATGTGAATATTCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGC 70967 || || || | |||||| || | ||| || |||||||| || || || | ||||| Sbjct 918609 TGGCTCCGCGACGTGAATGTTGAACGATTGCGACTGATCGATAAACGCACCACGATCTGC 918668 Query 70968 AGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAAC-TCGCTTAA 71026 |||||||| ||| ||| || | || ||||| | ||||| || | |||| || Sbjct 918669 GGCCATTTTGATGCACGTTTTCACCGAGATCTCCCATACCGTTTTGTACAGGTCGCG-AA 918727 Query 71027 TATCTTCTGGAAGGTTTGTATTCT---GAATGGATCCACCATCTGCAATAATCCTATTTT 71083 | || | || | | | ||| | || |||||| | | | ||| || | Sbjct 918728 TTTCCTGCGGTATAGCCGCAATCTTTTGGATCGATCCATTGTTGGACAGAATTTCGTTCT 918787 Query 71084 TGATCTCTTCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATTAACTA 71143 | || || || ||| | | | ||| ||| | || |||||| | || || | Sbjct 918788 TCATGTCGAGATCCCACAGACCCATGTTGGTCAAATCCTGCAGAAGATGATGGTTCACCA 918847 Query 71144 CTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATACGGTTCCACTG 71203 | || || || || |||| || | | | |||||| || || ||||| || | | Sbjct 918848 CCTGGAACTCGCCCGACAGCACGCGCCTATTGTAAACGTTCGACGTGTACGGCTCGAACG 918907 Query 71204 ACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAGAC 71263 | ||||| || || | |||||| || || || || |||||||| || |||| || || Sbjct 918908 ATTCATTGTTGCCGAGAATTTGTGCCGTGGAAGCCGTCGGCATCGGGGCCAACAGCAGCG 918967 Query 71264 TATTTCTAAGACCATGTGATCGGATTTTATCTTTTAGAGATTCCCAATTCCAAAGATCCG 71323 ||| | || ||| ||| ||| || || || | |||| ||||| ||||||| Sbjct 918968 AATTGCGAATACCGTGTTTGGCGATCTTTTCCTTCAACTCGGCCCAGTTCCACAGATCCG 919027 Query 71324 ATGGTACAACNNNNNNNNNNNNNNNNNNNNNNATGCCGTTACT-AGCGTATGATCCTGCA 71382 ||| | ||||| || || | || | ||| | Sbjct 919028 TCGGTTCCTTGTTCCACATCTCGTACTGCAAGATGCCCTTGCTCACCGGACTGCCCT-CG 919086 Query 71383 TATGTATCGTATGGTCCTTCTTTTTCGGCTAGTTCACAACTCGCCTCTAATGCTCCATAA 71442 || || ||||| || || ||| |||| | ||||| ||||| || | || || || Sbjct 919087 TACGTCTCGTACGGACCATCTCGAGCGGCCAACTCACAGCTCGCTTCCAGCGCGCCGTAG 919146 Query 71443 TAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCCGGGCTATCAAATGGATAA 71502 || || |||||||| || | || ||| || | ||| || || ||| || | ||||| Sbjct 919147 TAGATAGTTTCGAATATTTGCTGATTTAGCTTTTGAGCCTCTTCGCTTTCGTACGGATAG 919206 Query 71503 TTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACGCCAATACCGATAGGTCTGTGTCTC 71562 | || || ||||| || || | ||||| ||||| || ||||| || ||||| | | Sbjct 919207 CGCATCAGGATGAACGCATCGGCCATGCCTTGCACGCCGATCCCGATCGGCCTGTGGCGC 919266 Query 71563 TTATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGA 71622 |||| || | ||| || || | ||||| ||||| | ||| || ||||| || ||| Sbjct 919267 ATATTGGAGCGCTTAGCCTCCGGCACGGGATAGTAATTGACATCAATGATTTTGTTCAGA 919326 Query 71623 TTTC---TGACTATTACTTTGACCACATCCTTTAGTTTGAGAAAATCAAATCTCCCATCT 71679 || | | ||| | ||| | | || ||||| || || ||| ||| | | ||| Sbjct 919327 TTGCGCGTCACTGT--CTTAG-CGACTTCCTTCAGCTTTGCAAAGTCATACGTTTTGTCT 919383 Query 71680 A---TTACAAACACGTTCAAGGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCA 71736 ||||||||| ||||||||| | || |||||||| || || |||||||||| | Sbjct 919384 TGCTTTACAAACATGTTCAAGGCGATCGAGGCCAGATTGCATACCGCTACCTCATC--CT 919441 Query 71737 TCGGCA--TATTGTATAATTTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTT 71794 ||| | || | | ||| |||||||| | || ||| |||||||| || | ||| | Sbjct 919442 TCGACGAGTACTCCACAATCTCAGTGCACAAGTTGGAACATTTGATGGTGCCGATATTCT 919501 Query 71795 GTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATAAACGGAGTACCAGTTTCAA 71854 | || ||||| || || || |||||||| || || || |||| || ||||| | Sbjct 919502 GCTGGTTACTTTTACGATTGCAAGCATCCTTGTACAGCATGTACGGCACGCCGGTTTCCA 919561 Query 71855 TCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATATTCTTGTATCTCT 71914 || ||||| || ||||| ||| | | | ||||| | | | | | Sbjct 919562 CTTGCGATTCGATTATCGCAAACCACAGATCCTGCGCCTTCACCTGTCGCATAAAGCGAC 919621 Query 71915 TTTCTCTTTCGTATT--GTGTATATAATCGTTCGAACTCGTCTCCCCAAGCATTGTCTAA 71972 ||| | ||||| ||||| | || |||||||| || ||||| | |||| | Sbjct 919622 CCTCTTTCTCGTACCCCGTGTACAGCTTC--TCGAACTCTTCGCCCCAGG---TGTCCGA 919676 Query 71973 T---CCAGGACATTCATTCGGACACATCAATGACCACTCTCCATCATCATTTACTCGTTT 72029 | || ||||| || | ||| ||||||| |||| | | | | | || || | Sbjct 919677 TAGCCCGGGACAATCGTGCGGGCACATCAGGCTCCACATTTCGTTCGCCTCCACACGCTG 919736 Query 72030 CATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATG--CTCCTCG 72087 ||| || || || || ||||| || || |||| | || || || | | |||||| Sbjct 919737 CATGAACAGGTCCGGTATCCACAGTGCG-TAAA-ACATGTCCCGTGCGCGGACCTCCTCC 919794 Query 72088 TTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAG 72147 || || || || || || |||||||| ||| | | ||||| ||||||||| || | Sbjct 919795 TTGCCGGTGTTTTTCTTCAGATCGAGAAACTCGAATATATCGCCATGCCACGGCTCGAGA 919854 Query 72148 TATATGGCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTA 72207 || ||||| | |||| ||||| ||||| || |||||||| | ||| | || || || Sbjct 919855 TAGATGGCGAATGCTCCAGGCCGCTTGTTACCGCCCTGATCGACGTACCGTGCCGTATTG 919914 Query 72208 TTATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAG 72267 || || || | |||||| || | | ||| || || || || || |||||||| || Sbjct 919915 TTGTAGACGCGCAACATCGGCACCAGACCGTTTGAAATCCCGTTCGTACCGGAGATGTAC 919974 Query 72268 CTTCCACTGGCACGAATAT--TGCTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGA 72325 |||| | || |||||| ||| || | | || || || || ||| || || | Sbjct 919975 GTTCCCTTCGCGCGAATACAGTGCACGTTCA--GTCCGATGCCACCGGCCGACTTTGAAA 920032 Query 72326 TTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAA 72385 ||| || || | || | ||| || ||||||||||| || ||||| || |||| | | Sbjct 920033 TTAGGGCACACTGCTTCAGCGTGTCGTAGATGCCCTCAATGCTATCTTCGGACATGGTCA 920092 Query 72386 GTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAG 72445 || || ||| || | ||| | || || |||| ||| | || || || | Sbjct 920093 ACAGGAAGCAGGACGAAAGCTGGGGGCGCTGCGTAGCCGCCGCAAACATAGTTGGCGAGG 920152 Query 72446 CGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCC 72505 |||| ||||| | || ||||| |||||||| ||||| || |||| || || ||| Sbjct 920153 CGTGGGTAAAGTAACGCTCGGACAGCAGATTGTAGGTCTCGATCGCTGCATCGATGTCCT 920212 Query 72506 ATTGATGTATTCCTACCGCGACACGCATTAACATATGCTGAGGTCTTTCAACGATCTTGT 72565 ||| || || | || || ||||| | ||| ||||| || | || ||||| || Sbjct 920213 CGCCATGGATGCCAATAGCAACGCGCATCAGCATGTGCTGGGGGCGCTCGACGATTTTTC 920272 Query 72566 TATTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAA 72625 || || |||| |||||| ||| |||||| |||||||| || ||||||||||| | Sbjct 920273 CCTTGATCTTCAGCAAGTATGATCGTTCCAAGGTTTTAAAGCCGAAATAGTTGTACCCGA 920332 Query 72626 AGTCTCGTTCGTAAATAATAACCGAATTGAG 72656 |||| || ||||||||||| |||| || || Sbjct 920333 AGTCCCGATCGTAAATAATGGCCGAGTTCAG 920363 >seq2001 Length=1904535 Score = 86.0 bits (94), Expect = 8e-12 Identities = 176/259 (68%), Gaps = 7/259 (3%) Strand=Plus/Minus Query 42053 TTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTG 42112 || ||||||| || || || ||||||||||| || || || | || | ||||| Sbjct 1560349 TTGAACATCAGGCAGGCAAAGTCGCAGTGCAGCCCTTCGTCGCGCGAGATCAGCTCGTTC 1560290 Query 42113 GAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGAT 42172 || || |||||||| ||||| |||||||| || || ||||| || || | || || Sbjct 1560289 GAGAAGGTGAGTCCTGGCATCAGGCCACGTTTCTTCAGCCAGAAGATCGCGGCGAAGCTG 1560230 Query 42173 CCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCA 42232 || |||||||| || || || || || || || | | | ||| ||| | ||| Sbjct 1560229 CCGCTGAAGAAGATACCCTCAACCGCAGCGAATGCCACGACCCGCTCGCCAAAGTTGGC- 1560171 Query 42233 CTGTCATG-----TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCG 42287 || || || ||||| || | ||||| || |||||| || || || |||| || Sbjct 1560170 CT-TCTTGCTCGAGATCCAGTTCAGCGCCCAGTCCGCCTTCCGCTTCACGCACGGCAGCG 1560112 Query 42288 TTTCTATGGCATTAAAGAG 42306 |||| |||||||| || || Sbjct 1560111 TTTCGATGGCATTGAACAG 1560093 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671115517175480