Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20quadriannulatus_20[genbank_20GCA_5F000349065.1_202013- 03-28] 2,823 sequences; 283,828,998 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq890 120 7e-22 seq2001 84.2 5e-11 >seq890 Length=3078589 Score = 120 bits (132), Expect = 7e-22 Identities = 226/327 (69%), Gaps = 4/327 (1%) Strand=Plus/Minus Query 238561 AGCTCGAGAGAGCCGAAACTCACGATCCCCTATGGAATTCCGCCCAGATACAAATGGTAA 238620 |||| |||| ||| |||| || || || ||||| || |||||| | || ||||| | Sbjct 487931 AGCTGGAGACGGCCAAAACGCATGACGATCTGTGGAACTCGGCCCAGCTGCAGATGGTGA 487872 Query 238621 GACTAGGCAAAATGCATAGTTTCTTACGAATGTATTGGGCTAAAAAGATACTTGAATGGA 238680 ||||| ||||| | ||| | || ||||| ||||| |||||||| || || |||| Sbjct 487871 AGGAGGGCAAGATGCACGGCTTCCTGCGCATGTACTGGGCCAAAAAGATCCTGGAGTGGA 487812 Query 238681 CTAGATCTCCAAAGGAAGCTCTTAGATATAGT-ATTTATCTGAACGATAAATACGAACTC 238739 | | | | || | ||||| ||| || | | || |||||||||||| ||| || Sbjct 487811 CGAAAACGCCCGAAGAAGCGCTT-GAGACGGCGATCTATCTGAACGATCGCTACAGTCTG 487753 Query 238740 GACGGTACGGATCCTAACGGATACGTAGGTTGTATGTGGTCAATATGTGGATTACACGAT 238799 || || ||||| ||||| ||||| ||||| |||||||| || || | |||||| Sbjct 487752 GATGGGCGCGATCCGAACGGGTACGTCGGTTGCATGTGGTCGATCGCGGGCATCCACGAT 487693 Query 238800 -AGGGCATGGTCTGAGAGACCTATATTTGGAAAAGTTAGATACATGAATTATGAAGGAAC 238858 ||||| ||| ||| | || ||||| ||| || | |||||||| ||||| ||| Sbjct 487692 CAGGGC-TGGAAGGAGCGCGAAATCTTTGGCAAAATTCGGTACATGAACTATGACGGATG 487634 Query 238859 TAAGAAAAAATTTGATGTAAATGCTTT 238885 ||| ||||| | || ||||| || Sbjct 487633 CAAGCGTAAATTCAACGTGAATGCGTT 487607 >seq2001 Length=1904535 Score = 84.2 bits (92), Expect = 5e-11 Identities = 106/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 269138 GTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGG 269197 || || || || || || || ||||| ||||| || || ||||| ||||| ||| Sbjct 1560192 GTGGCATTCGCTGCGGTTGAGGGTATCTTCTTCAGCGGCAGCTTCGCCGCGATCTTCTGG 1560251 Query 269198 TTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGGGAC 269257 |||||||| | ||||| ||||||||| | || ||||| ||||| |||| | ||| Sbjct 1560252 CTGAAGAAACGTGGCCTGATGCCAGGACTCACCTTCTCGAACGAGCTGATCTCGCGCGAC 1560311 Query 269258 GAAGGTTTACACTGCGACTTCGCTTG 269283 ||||| | ||||||||||| || || Sbjct 1560312 GAAGGGCTGCACTGCGACTTTGCCTG 1560337 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151356754279684