Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20quadriannulatus_20[genbank_20GCA_5F000349065.1_202013- 03-28] 2,823 sequences; 283,828,998 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq113 104 2e-17 seq224 102 7e-17 >seq113 Length=3238079 Score = 104 bits (114), Expect = 2e-17 Identities = 162/232 (70%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 ||| ||||||| | | ||| | |||||| || |||||| || |||||||| || | Sbjct 854934 ACCACCGCGCAGGCGCAGCACCAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGA 854875 Query 48559 CAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618 || || | |||||||||||||| ||| || | || | |||||||||||| ||| Sbjct 854874 CAGCGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGCGG 854815 Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGT 48678 | | ||||||||| || ||| ||| | | | | || ||||| | | ||| Sbjct 854814 GATTCCCTCCTTGTCCTGGATCTTCGCCTTCACATTCTCGATCGTATCCGAGGGCTCGAC 854755 Query 48679 CTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCATCGTG 48730 ||| | || ||||| ||||| ||||| ||||| || || ||||||||| || Sbjct 854754 CTCAAGGGTAATGGTCTTACCCGTGAGGGTTTTGACGAAGATCTGCATCTTG 854703 Score = 104 bits (114), Expect = 2e-17 Identities = 151/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCA-ATTGTCGCTCGTCCT 48575 ||| | |||||| || ||||| ||||||||||| || | | | || || | |||| Sbjct 1949097 CACCAGATGAAGGGTCGATTCCTTCTGAATGTTGTAGTCGGAGAGAGTG-CGACCATCCT 1949155 Query 48576 CCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCA 48635 |||||||||| ||| || | || | |||||||||||| || | | |||||||||| Sbjct 1949156 CCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGAATGCCTTCCTTGTCCT 1949215 Query 48636 TAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTT 48695 || || ||| | | | | || || || | || ||| ||| | ||| ||||| | Sbjct 1949216 GGATCTTTGCCTTCACATTCTCGATCGTGTCCGAAGGCTCGACCTCAAGTGTGATGGTCT 1949275 Query 48696 TACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 | |||||||| |||||||| ||||||||||| Sbjct 1949276 TGCCGGTGAGTGTTTTCACGAAAATCTGCAT 1949306 >seq224 Length=3387546 Score = 102 bits (112), Expect = 7e-17 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 48523 ATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTG 48582 |||||| ||| |||||| || ||||| || || | || || | ||||||||||| Sbjct 1793885 ATGAAGGGTGGACTCCTTCTGGATGTTATAGTCCGACAGGGTGCGGCCATCCTCCAGCTG 1793944 Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642 ||| || || | || | |||||||||||| ||| | | ||||||||| || || Sbjct 1793945 CTTTCCAGCGAAGATCAGACGCTGCTGATCTGGCGGGATTCCCTCCTTGTCCTGGATCTT 1794004 Query 48643 CTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGT 48702 | ||| | | | | || ||||||| | || ||||| || ||||| || ||||| Sbjct 1794005 CGCCTTCACATTCTCAATCGTATCGGATGGTTCGACCTCGAGGGTGATGGTCTTTCCGGT 1794064 Query 48703 GAGAGTTTTCACAAAAATCTGCAT 48726 ||||||||||| ||||||||||| Sbjct 1794065 CAGAGTTTTCACGAAAATCTGCAT 1794088 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTC 48576 ||| | |||||| ||| ||||| || ||||| || || | || || | || || Sbjct 1793651 CACCAGATGAAGAGTGGATTCCTTCTGGATGTTATAGTCCGACAGGGTGCGGCCATCTTC 1793710 Query 48577 CAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCAT 48636 ||||||||| || || | || | |||||||||||| ||| | | ||||||||| Sbjct 1793711 CAGCTGCTTTCCAGCGAAGATCAGACGCTGCTGATCTGGCGGGATTCCCTCCTTGTCCTG 1793770 Query 48637 AATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTT 48696 || || ||||| | | || ||||| | | ||| ||| | || ||||| || Sbjct 1793771 GATCTTTGCCTTGACGTTCTCAATCGTATCCGATGGCTCAACCTCCAGAGTGATGGTCTT 1793830 Query 48697 ACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 ||||| ||||||||||| ||||||||||| Sbjct 1793831 TCCGGTCAGAGTTTTCACGAAAATCTGCAT 1793860 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421236706720823