Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20quadriannulatus_20[genbank_20GCA_5F000349065.1_202013- 03-28] 2,823 sequences; 283,828,998 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq2114 95.1 6e-15 seq2580 93.3 2e-14 seq890 86.0 3e-12 >seq2114 Length=1728968 Score = 95.1 bits (104), Expect = 6e-15 Identities = 68/79 (86%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 |||||| |||||||| | || |||||||||| |||||||||||||||||||||||| Sbjct 905219 AAAAAAGTAAATTGGCTCCAGAGAGGATCGAACTCACGACCTTCGCGTTATTAGCACGAC 905160 Query 11504 GCTCTRACCAACTGAGCTA 11522 ||||| |||| |||||||| Sbjct 905159 GCTCTAACCAGCTGAGCTA 905141 Score = 89.7 bits (98), Expect = 3e-13 Identities = 66/78 (85%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 || ||||| | || |||||||||| ||||||||||||||||||||||||||||| || Sbjct 961962 AATTTGGCTCCAGAGAGGATCGAACTCACGACCTTCGCGTTATTAGCACGACGCTCTAAC 962021 Query 11512 CAACTGAGCTAATGGGCC 11529 || |||||||| ||||| Sbjct 962022 CAGCTGAGCTATGGGGCC 962039 Score = 86.0 bits (94), Expect = 3e-12 Identities = 70/85 (82%), Gaps = 2/85 (2%) Strand=Plus/Plus Query 11440 TAATAAAAAATCAAA--TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAG 11497 ||| | ||||| | | ||||| | || |||||||||| |||||||||||||||||| Sbjct 960833 TAAAATAAAATTATACCTTGGCTCCAGAGAGGATCGAACTCACGACCTTCGCGTTATTAG 960892 Query 11498 CACGACGCTCTRACCAACTGAGCTA 11522 ||||||||||| |||| |||||||| Sbjct 960893 CACGACGCTCTAACCAGCTGAGCTA 960917 Score = 86.0 bits (94), Expect = 3e-12 Identities = 64/76 (84%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||| | || |||||||||| ||||||||||||||||||||||||||||| |||| | Sbjct 987216 TGGCTCCAGAGAGGATCGAACTCACGACCTTCGCGTTATTAGCACGACGCTCTAACCAGC 987275 Query 11516 TGAGCTAATGGGCCGT 11531 ||||||| | ||||| Sbjct 987276 TGAGCTATGGAGCCGT 987291 Score = 84.2 bits (92), Expect = 1e-11 Identities = 59/68 (87%), Gaps = 0/68 (0%) Strand=Plus/Plus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 ||||| | || |||||||||| ||||||||||||||||||||||||||||| |||| Sbjct 975493 TTGGCTCCAGAGAGGATCGAACTCACGACCTTCGCGTTATTAGCACGACGCTCTAACCAG 975552 Query 11515 CTGAGCTA 11522 |||||||| Sbjct 975553 CTGAGCTA 975560 Score = 82.4 bits (90), Expect = 4e-11 Identities = 58/67 (87%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||| | || |||||||||| ||||||||||||||||||||||||||||| |||| | Sbjct 908957 TGGCTCCAGAGAGGATCGAACTCACGACCTTCGCGTTATTAGCACGACGCTCTAACCAGC 908898 Query 11516 TGAGCTA 11522 ||||||| Sbjct 908897 TGAGCTA 908891 Score = 82.4 bits (90), Expect = 4e-11 Identities = 58/67 (87%), Gaps = 0/67 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||| | || |||||||||| ||||||||||||||||||||||||||||| |||| | Sbjct 961683 TGGCTCCAGAGAGGATCGAACTCACGACCTTCGCGTTATTAGCACGACGCTCTAACCAGC 961742 Query 11516 TGAGCTA 11522 ||||||| Sbjct 961743 TGAGCTA 961749 Score = 82.4 bits (90), Expect = 4e-11 Identities = 58/67 (87%), Gaps = 0/67 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||| | || |||||||||| ||||||||||||||||||||||||||||| |||| | Sbjct 962415 TGGCTCCAGAGAGGATCGAACTCACGACCTTCGCGTTATTAGCACGACGCTCTAACCAGC 962474 Query 11516 TGAGCTA 11522 ||||||| Sbjct 962475 TGAGCTA 962481 >seq2580 Length=953606 Score = 93.3 bits (102), Expect = 2e-14 Identities = 68/80 (85%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 |||||||| | || |||||||||| ||||||||||||||||||||||||||||| || Sbjct 626882 AAATTGGCTCCAGAGAGGATCGAACTCACGACCTTCGCGTTATTAGCACGACGCTCTAAC 626941 Query 11512 CAACTGAGCTAATGGGCCGT 11531 || |||||||| | ||||| Sbjct 626942 CAGCTGAGCTATGGAGCCGT 626961 Score = 84.2 bits (92), Expect = 1e-11 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||| | || |||||||||| ||||||||||||||||||||||||||||| |||| | Sbjct 624885 TGGCTCCAGAGAGGATCGAACTCACGACCTTCGCGTTATTAGCACGACGCTCTAACCAGC 624944 Query 11516 TGAGCTAATGGGCCG 11530 ||||||| | |||| Sbjct 624945 TGAGCTATGGAGCCG 624959 Score = 84.2 bits (92), Expect = 1e-11 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||| | || |||||||||| ||||||||||||||||||||||||||||| |||| | Sbjct 689148 TGGCTCCAGAGAGGATCGAACTCACGACCTTCGCGTTATTAGCACGACGCTCTAACCAGC 689089 Query 11516 TGAGCTAATGGGCCG 11530 ||||||| | |||| Sbjct 689088 TGAGCTATGGAGCCG 689074 >seq890 Length=3078589 Score = 86.0 bits (94), Expect = 3e-12 Identities = 64/76 (84%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 ||||| | || |||||||||| ||||||||||||||||||||||||||||| |||| Sbjct 2660614 TTGGCTCCAGAGAGGATCGAACTCACGACCTTCGCGTTATTAGCACGACGCTCTAACCAG 2660673 Query 11515 CTGAGCTAATGGGCCG 11530 |||||||| | |||| Sbjct 2660674 CTGAGCTATGGAGCCG 2660689 Lambda K H 0.639 0.410 0.921 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261482203313548