Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20quadriannulatus_20[genbank_20GCA_5F000349065.1_202013- 03-28] 2,823 sequences; 283,828,998 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq113 122 8e-23 seq224 109 5e-19 >seq113 Length=3238079 Score = 122 bits (134), Expect = 8e-23 Identities = 159/220 (72%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 94792 TCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA 94851 ||||| ||||| || | || |||||||| || | ||| || ||| | |||| Sbjct 1949091 TCGCAGCACCAGATGAAGGGTCGATTCCTTCTGAATGTTGTAGTCGGAGAGAGTGCGACC 1949150 Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 |||||||||||| || ||| | ||||| | | ||||||||||| ||||| ||||| || Sbjct 1949151 ATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGAATGCCTTCCTT 1949210 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971 ||| | || |||||||| || ||| ||||| | | ||||| |||| ||||| Sbjct 1949211 GTCCTGGATCTTTGCCTTCACATTCTCGATCGTGTCCGAAGGCTCGACCTCAAGTGTGAT 1949270 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGCTT 95011 ||| || || || || |||||||| || ||||||||| || Sbjct 1949271 GGTCTTGCCGGTGAGTGTTTTCACGAAAATCTGCATGTTT 1949310 Score = 100 bits (110), Expect = 3e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852 |||| ||||| || | || || ||||| || | ||| || ||| || ||| | | Sbjct 854921 CGCAGCACCAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGCGTGCGGCCA 854862 Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 ||||||||||| || ||| | ||||| | | ||||||||||| || || || || ||| Sbjct 854861 TCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGCGGGATTCCCTCCTTG 854802 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | || || ||||| || ||| || || | | | ||||| |||| || ||| Sbjct 854801 TCCTGGATCTTCGCCTTCACATTCTCGATCGTATCCGAGGGCTCGACCTCAAGGGTAATG 854742 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || || || || ||||| || ||||||||||| Sbjct 854741 GTCTTACCCGTGAGGGTTTTGACGAAGATCTGCAT 854707 >seq224 Length=3387546 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 94780 TCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCT 94839 ||| || | || || | ||||| || | ||| |||||||| || | |||||| || Sbjct 1793633 TCCACCACGCAGACGGAGCACCAGATGAAGAGTGGATTCCTTCTGGATGTTATAGTCCGA 1793692 Query 94840 CATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGG 94899 || ||| | ||| |||||||| ||||| | ||||| | | ||||||||||| || Sbjct 1793693 CAGGGTGCGGCCATCTTCCAGCTGCTTTCCAGCGAAGATCAGACGCTGCTGATCTGGCGG 1793752 Query 94900 AATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGAC 94959 || || || ||||| | || |||||||||||| | | || || | | || || Sbjct 1793753 GATTCCCTCCTTGTCCTGGATCTTTGCCTTGACGTTCTCAATCGTATCCGATGGCTCAAC 1793812 Query 94960 GTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || | |||||||| ||||| || ||||||||||| || |||||||| Sbjct 1793813 CTCCAGAGTGATGGTCTTTCCGGTCAGAGTTTTCACGAAAATCTGCAT 1793860 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 94811 GTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCG 94870 || || ||||| || | |||||| || || ||| | |||||||||||| ||||| Sbjct 1793892 GTGGACTCCTTCTGGATGTTATAGTCCGACAGGGTGCGGCCATCCTCCAGCTGCTTTCCA 1793951 Query 94871 CCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTG 94930 | ||||| | | ||||||||||| || || || || ||||| | || || ||||| Sbjct 1793952 GCGAAGATCAGACGCTGCTGATCTGGCGGGATTCCCTCCTTGTCCTGGATCTTCGCCTTC 1794011 Query 94931 ACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTT 94990 || | | || || | | ||||| || | |||||||| ||||| || |||||| Sbjct 1794012 ACATTCTCAATCGTATCGGATGGTTCGACCTCGAGGGTGATGGTCTTTCCGGTCAGAGTT 1794071 Query 94991 TTCACAAAGATCTGCAT 95007 ||||| || |||||||| Sbjct 1794072 TTCACGAAAATCTGCAT 1794088 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448275380924280