Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20quadriannulatus_20[genbank_20GCA_5F000349065.1_202013- 03-28] 2,823 sequences; 283,828,998 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq2381 398 9e-106 seq2001 104 3e-17 >seq2381 Length=1337761 Score = 398 bits (440), Expect = 9e-106 Identities = 1211/1854 (65%), Gaps = 32/1854 (2%) Strand=Plus/Plus Query 62016 GCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAA 62075 || || || ||||| ||||||||||| || ||||| | ||| | |||| ||||| ||| Sbjct 918523 GCTGGCTTGGTACGCAGATAGTACATGCCAGTTTTCAAACCCATCTTCCAGCCGTAGAAA 918582 Query 62076 TGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTT 62135 || || ||| || ||| ||| | || || || | || || || | ||||| Sbjct 918583 TGGATCGACGTCAGCTTGCCATAGTTTGGCTCCGCGACGTGAATGTTGAACGATTGCGAC 918642 Query 62136 TGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCC 62195 |||||||| || || || | ||||| |||||||| ||| ||| || | || ||| Sbjct 918643 TGATCGATAAACGCACCACGATCTGCGGCCATTTTGATGCACGTTTTCACCGAGATCTCC 918702 Query 62196 CAAATAGTTTTATAAAC-TCGCTTAATATCTTCTGGAAGGTTTGTATTCT---GAATGGA 62251 || | ||||| || | |||| ||| || | || | | | ||| | || || Sbjct 918703 CATACCGTTTTGTACAGGTCGCG-AATTTCCTGCGGTATAGCCGCAATCTTTTGGATCGA 918761 Query 62252 TCCACCATCTGCCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAA 62311 |||| | | || ||| ||||| || || || ||| | | | ||| || Sbjct 918762 TCCATTGTTGGACAGAATTTCGTTCTTCATGTCGAGATCCCACAGACCCATGTTGGTCAA 918821 Query 62312 AACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTA 62371 | | || ||||| | || || || || || || || |||| || | || | |||| Sbjct 918822 ATCCTGCAGAAGATGATGGTTCACCACCTGGAACTCGCCCGACAGCACGCGCCTATTGTA 918881 Query 62372 AATATTACTGGTATACGGTTCCACCGACTCATTATTTCCCAAAATTTGAGCAGTTGATGC 62431 || || || ||||| || | ||| ||||| || || | |||||| || || || || Sbjct 918882 AACGTTCGACGTGTACGGCTCGAACGATTCATTGTTGCCGAGAATTTGTGCCGTGGAAGC 918941 Query 62432 AGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGATTTTATCTTT 62491 |||||||| || |||| || | ||| | || ||||| | | ||| || || || Sbjct 918942 CGTCGGCATCGGGGCCAACAGCAGCGAATTGCGAATACCGTGTTTGGCGATCTTTTCCTT 919001 Query 62492 TAGAGGTTCCCAATTCCAAAGATCCGACGGTACAACNNNNNNNNNNNNNNNTTGTAGAAT 62551 | |||| ||||| ||||||| |||| | || | || Sbjct 919002 CAACTCGGCCCAGTTCCACAGATCCGTCGGTTCCTTGTTCCACATCTCGTACTGCAAGAT 919061 Query 62552 ACCGTTACTGGC-GTACGATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTT 62610 || || || | | || ||| | || || ||||| || || || | || | | Sbjct 919062 GCCCTTGCTCACCGGACTGCCCT-CGTACGTCTCGTACGGACCATCTCGAGCGGCCAACT 919120 Query 62611 CACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTT 62670 |||| ||||| || | || ||||| || || |||||||| || | || |||||| | || Sbjct 919121 CACAGCTCGCTTCCAGCGCGCCGTAGTAGATAGTTTCGAATATTTGCTGATTTAGCTTTT 919180 Query 62671 GTGCTTCCAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAA 62730 | || || ||| || | ||||| | || || ||||| || || | ||||| | Sbjct 919181 GAGCCTCTTCGCTTTCGTACGGATAGCGCATCAGGATGAACGCATCGGCCATGCCTTGCA 919240 Query 62731 CACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAAT 62790 | || || ||||| || || || | | |||| ||| | ||| || || | ||||| | Sbjct 919241 CGCCGATCCCGATCGGCCTGTGGCGCATATTGGAGCGCTTAGCCTCCGGCACGGGATAGT 919300 Query 62791 AATTAATATCTATAATTTTATTGAGATTTCT-GACAATTACTTTGACCACATCCTTCAGT 62849 |||| | ||| || ||||| || ||||| | | || | ||| | | || |||||||| Sbjct 919301 AATTGACATCAATGATTTTGTTCAGATTGCGCGTCACTGTCTTAG-CGACTTCCTTCAGC 919359 Query 62850 TTGAGAAAATCAAA----TCGCCCATCTATTACAAACATGTTCAAGGCAACAGATGCCAG 62905 || ||| ||| | | | | || ||||||||||||||||||| | || ||||| Sbjct 919360 TTTGCAAAGTCATACGTTTTGTCTTGCT-TTACAAACATGTTCAAGGCGATCGAGGCCAG 919418 Query 62906 ATTACAAACGGCTACCTCATTAGCATC--CGCATATTGTATTATCTCAGTGCAAAGATTA 62963 ||| || || |||||||||| | || || || | | ||||||||||| | || Sbjct 919419 ATTGCATACCGCTACCTCATC--CTTCGACGAGTACTCCACAATCTCAGTGCACAAGTTG 919476 Query 62964 CTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAA 63023 ||| ||||| || || | ||| || || ||||| || || || |||||||| || Sbjct 919477 GAACATTTGATGGTGCCGATATTCTGCTGGTTACTTTTACGATTGCAAGCATCCTTGTAC 919536 Query 63024 AGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGA 63083 || ||| | || || ||||| | || ||||| || ||||| ||| | | | Sbjct 919537 AGCATGTACGGCACGCCGGTTTCCACTTGCGATTCGATTATCGCAAACCACAGATCCTGC 919596 Query 63084 GCCTTTAT-TATAGATTTGTATCTCCTTTCTCTTTCGTATAGTGTATACAATCGTTCGAA 63142 ||||| | | | | | | | | ||| | ||||| || |||| ||||| Sbjct 919597 GCCTTCACCTGTCGCATAA-AGCGACCCTCTTTCTCGTACCCCGTGTACAGCTTCTCGAA 919655 Query 63143 CTCGTCTCCCCAAACATTGTCCAAT---CCAGGACATTCATCCGGACACATCAACGACCA 63199 ||| || ||||| ||||| || || ||||| || | ||| ||||||| ||| Sbjct 919656 CTCTTCGCCCCAGG---TGTCCGATAGCCCGGGACAATCGTGCGGGCACATCAGGCTCCA 919712 Query 63200 CTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAG 63259 | | ||| ||| ||| || | ||| || || || || ||||| || || |||| | Sbjct 919713 CATTTCGTTCGCCTCCACACGCTGCATGAACAGGTCCGGTATCCACAGTGCG-TAAA-AC 919770 Query 63260 ATCTCTGGTTCTATGT--TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATA 63317 || || || | | ||||| || || || || || || |||||||| ||| | | Sbjct 919771 ATGTCCCGTGCGCGGACCTCCTCCTTGCCGGTGTTTTTCTTCAGATCGAGAAACTCGAAT 919830 Query 63318 ATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCC 63377 ||||| ||||||||| || | || ||||| | |||||||||| ||||| || ||| Sbjct 919831 ATATCGCCATGCCACGGCTCGAGATAGATGGCGAATGCTCCAGGCCGCTTGTTACCGCCC 919890 Query 63378 TGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGAT 63437 ||||| | ||| | || || || || || || | |||||| || | | ||||||||| Sbjct 919891 TGATCGACGTACCGTGCCGTATTGTTGTAGACGCGCAACATCGGCACCAGACCGTTTGAA 919950 Query 63438 ATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGAT-AGACC 63496 || || || ||||||||||| || |||| | || |||||| | | | | || || Sbjct 919951 ATCCCGTTCGTACCGGAGATGTACGTTCCCTTCGCGCGAATAC-AGTGCACGTTCAGTCC 920009 Query 63497 TATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATACCCTC 63556 || || || ||| || || |||| || || | || | |||||| ||||| ||||| Sbjct 920010 GATGCCACCGGCCGACTTTGAAATTAGGGCACACTGCTTCAGCGTGTCGTAGATGCCCTC 920069 Query 63557 TATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCC 63616 |||||||| ||| |||| | | || || ||| || | ||| | || || | Sbjct 920070 AATGCTATCTTCGGACATGGTCAACAGGAAGCAGGACGAAAGCTGGGGGCGCTGCGTAGC 920129 Query 63617 CGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGT 63676 ||| ||| | || || || ||||| ||||| | || || || |||||||| || Sbjct 920130 CGCCGCAAACATAGTTGGCGAGGCGTGGGTAAAGTAACGCTCGGACAGCAGATTGTAGGT 920189 Query 63677 CTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTG 63736 ||| || |||| || || ||| ||| || || | || || ||||| | |||||| Sbjct 920190 CTCGATCGCTGCATCGATGTCCTCGCCATGGATGCCAATAGCAACGCGCATCAGCATGTG 920249 Query 63737 CTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTT 63796 ||| || | || ||||| || || || |||| |||||| ||| |||||| ||||| Sbjct 920250 CTGGGGGCGCTCGACGATTTTTCCCTTGATCTTCAGCAAGTATGATCGTTCCAAGGTTTT 920309 Query 63797 AAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAG 63850 ||| || ||||||||||| ||||| || ||||||||||| ||||||| || Sbjct 920310 AAAGCCGAAATAGTTGTACCCGAAGTCCCGATCGTAAATAATGGCCGAGTTCAG 920363 >seq2001 Length=1904535 Score = 104 bits (114), Expect = 3e-17 Identities = 180/259 (69%), Gaps = 7/259 (3%) Strand=Plus/Minus Query 33292 TTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTG 33351 || ||||||| || || || ||||||||||| || ||||| | || || ||||| Sbjct 1560349 TTGAACATCAGGCAGGCAAAGTCGCAGTGCAGCCCTTCGTCGCGCGAGATCAGCTCGTTC 1560290 Query 33352 GAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGAT 33411 || || |||||||| ||||| |||||||| || || ||||| || || | ||||| Sbjct 1560289 GAGAAGGTGAGTCCTGGCATCAGGCCACGTTTCTTCAGCCAGAAGATCGCGGCGAAGCTG 1560230 Query 33412 CCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCG 33471 || |||||||| || || || ||||| || || | | | ||| ||| | ||| Sbjct 1560229 CCGCTGAAGAAGATACCCTCAACCGCAGCGAATGCCACGACCCGCTCGCCAAAGTTGGC- 1560171 Query 33472 CTGTCATG-----TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCG 33526 || || || ||||| || | ||||| || |||||| || || || |||| || Sbjct 1560170 CT-TCTTGCTCGAGATCCAGTTCAGCGCCCAGTCCGCCTTCCGCTTCACGCACGGCAGCG 1560112 Query 33527 TTTCTATGGCATTAAAGAG 33545 |||| |||||||| || || Sbjct 1560111 TTTCGATGGCATTGAACAG 1560093 Score = 91.5 bits (100), Expect = 2e-13 Identities = 154/223 (69%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 33613 TTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTA 33672 ||||| || || ||||| || |||||||| || | ||||| |||| ||| || || Sbjct 1559919 TTTTCCATCGCAATCTGGAAGCCGTAGAAGCAGCGCGCCTCCGTAACCTGCACCTCCTGG 1559860 Query 33673 CAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAAT 33732 | || |||||| ||| ||| || ||||| || ||||| || ||||| || |||| Sbjct 1559859 CTGAAGCGTTCCACCAGATTCTCGTTCACGATACCGTCGGACGCAGCAAAGAAGGCCAGC 1559800 Query 33733 ACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTA 33792 || || || || | |||| ||| | || | |||||| || ||||| || Sbjct 1559799 ACGTGGGAGATGAAGTGGCGTTCGCTCGGTTTCAGCGACTCCCAATCCTTCATATCCTTG 1559740 Query 33793 GATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCT 33835 || | ||| ||||||||||| ||||| || || || || |||| Sbjct 1559739 GACAGATCAACTTCTTCCACCGTCCAGAAGGAAGCTTCCGCCT 1559697 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622925217750680