Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20quadriannulatus_20[genbank_20GCA_5F000349065.1_202013- 03-28] 2,823 sequences; 283,828,998 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq335 170 1e-37 seq113 107 1e-18 seq2556 98.7 7e-16 seq224 91.5 1e-13 >seq335 Length=3842677 Score = 170 bits (188), Expect = 1e-37 Identities = 165/212 (78%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 6162 ATGGGGACCCTGAACGTAAATCGTAATGTGGCGGACGCGTTCTACCGCTACAAAATGCCG 6221 |||| ||| ||||||| ||||| |||||| | ||| |||||||| ||||| ||||| Sbjct 142279 ATGGCTACCGTGAACGTGAATCGCAATGTGACCGACATCTTCTACCGGTACAAGATGCCC 142338 Query 6222 CGCATCTGCGCCAAGGTCGAGGGTAAGGGAAACGGTATTAAAACCGTCATTGTCAACATG 6281 |||||| ||| ||||| ||||||||||||||||| || || || || || || |||||| Sbjct 142339 CGCATCAACGCGAAGGTAGAGGGTAAGGGAAACGGCATCAAGACGGTGATCGTGAACATG 142398 Query 6282 CCTGAAGTCGCTAAGGCGCTCGGACGCCCTGCCACCTACCCGACGAAATATTTCGGGTGC 6341 | || || || ||| |||| ||||| || |||||||||||||| || || || ||| Sbjct 142399 GCCGATGTGGCGCGCGCGATCGGCCGCCCGGCAACCTACCCGACGAAGTACTTTGGCTGC 142458 Query 6342 GAACTTGGCGCTCAGACGCAGTTTGATCACAA 6373 || || || ||||| ||||| ||||| || || Sbjct 142459 GAGCTGGGAGCTCAAACGCAATTTGACCATAA 142490 Score = 152 bits (168), Expect = 3e-32 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 6375 AACGAGCGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGACTTACTTGAC 6434 ||||| |||||||| || ||||| ||||| | | |||||||||||||| | || ||| Sbjct 142559 AACGAACGCTTCATTGTGAACGGTTCGCACGATGCGGCCAAGCTGCAGGATCTGCTCGAC 142618 Query 6435 GGCTTTATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGACCGAGCTTATT 6494 || || || ||||||||||||||||| | ||| ||||| ||||||||||| || || || Sbjct 142619 GGGTTCATCCGCAAGTTTGTGCTGTGCCCGGAGTGCGACAACCCGGAGACGGATCTGATC 142678 Query 6495 GTGTCTACCAAGAGAAACACCATCTCTCAGGGCTGCAAAGCGTGCGGTTACCATGGCAAG 6554 || || |||||| || ||||| ||||||||||| |||||||| | ||| || | Sbjct 142679 GTCTCGTCCAAGAAGGGTACGATCTCGCAGGGCTGCAAGGCGTGCGGCTTCCACGGGCCG 142738 Query 6555 CTGGATTTATCACACAAACTCAACACCTTCATACTGAAGAATCCTCC 6601 || || | ||||| | ||||| ||||| | ||||| || || Sbjct 142739 CTCGAGGTGAACCACAAGGTGAACACGTTCATCATCAAGAACCCGCC 142785 >seq113 Length=3238079 Score = 107 bits (118), Expect = 1e-18 Identities = 164/234 (70%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 38088 TTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCA 38147 |||||||| | | |||| ||||| |||||| || ||||| ||||| ||||| || Sbjct 1949077 TTACCACCACGGAGTCGCAGCACCAGATGAAGGGTCGATTCCTTCTGAATGTTGTAGTCG 1949136 Query 38148 GACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAG 38207 || | | || | || || | || || ||||| || || || || || ||||| | | Sbjct 1949137 GAGAGAGTGCGACCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGG 1949196 Query 38208 GGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCA 38267 || | |||||| |||||| || ||| ||||||||||| || || || | || Sbjct 1949197 GGAATGCCTTCCTTGTCCTGGATCTTTGCCTTCACATTCTCGATCGTGTCCGAAGGCTCG 1949256 Query 38268 ACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTTT 38321 || || | ||| || || || || || | ||||||||||| |||||||||||| Sbjct 1949257 ACCTCAAGTGTGATGGTCTTGCCGGTGAGTGTTTTCACGAAAATCTGCATGTTT 1949310 Score = 96.9 bits (106), Expect = 2e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 38090 ACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGA 38149 |||||| | || |||| ||||| |||||| || |||||| || || ||||| || || Sbjct 854934 ACCACCGCGCAGGCGCAGCACCAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGA 854875 Query 38150 CAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGG 38209 || || | || || | || || ||||| || || || || || ||||| | || Sbjct 854874 CAGCGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGCGG 854815 Query 38210 GACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAAC 38269 || || || |||||| || || ||||||||||| || ||||| || || Sbjct 854814 GATTCCCTCCTTGTCCTGGATCTTCGCCTTCACATTCTCGATCGTATCCGAGGGCTCGAC 854755 Query 38270 TTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 || | ||||| || |||||||| | |||||| ||||| |||||||| || Sbjct 854754 CTCAAGGGTAATGGTCTTACCCGTGAGGGTTTTGACGAAGATCTGCATCTT 854704 >seq2556 Length=16943 Score = 98.7 bits (108), Expect = 7e-16 Identities = 68/77 (88%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||| ||| |||||||||||||||||||||||||||||||||||||| ||| Sbjct 16227 CTCTCTATTCAGAGTGCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGACTCAT 16168 Query 20007 GGTAATATTTAGCCTTA 20023 ||| |||||||| ||| Sbjct 16167 GGTGGTATTTAGCTTTA 16151 >seq224 Length=3387546 Score = 91.5 bits (100), Expect = 1e-13 Identities = 161/235 (69%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||| | || ||| | |||| |||||| ||| |||||| || || || || || | Sbjct 1793860 TACCACCACGCAGACGGAGAACCAGATGAAGGGTGGACTCCTTCTGGATGTTATAGTCCG 1793919 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 ||| || | || || | || ||||| || || || || || || ||||| | | Sbjct 1793920 ACAGGGTGCGGCCATCCTCCAGCTGCTTTCCAGCGAAGATCAGACGCTGCTGATCTGGCG 1793979 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 ||| || || |||||| || || ||||||||||| | ||||| ||| | Sbjct 1793980 GGATTCCCTCCTTGTCCTGGATCTTCGCCTTCACATTCTCAATCGTATCGGATGGTTCGA 1794039 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTTTTA 38323 | || | || || || || || |||| ||||||||||| |||||||| ||||| Sbjct 1794040 CCTCGAGGGTGATGGTCTTTCCGGTCAGAGTTTTCACGAAAATCTGCATATTTTA 1794094 Score = 84.2 bits (92), Expect = 1e-11 Identities = 157/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 38087 ATTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATC 38146 ||| ||||| | || ||| | ||||| |||||||||| ||||| || || || || || Sbjct 1793630 ATTTCCACCACGCAGACGGAGCACCAGATGAAGAGTGGATTCCTTCTGGATGTTATAGTC 1793689 Query 38147 AGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGA 38206 |||| || | || || | || ||||| || || || || || || ||||| | Sbjct 1793690 CGACAGGGTGCGGCCATCTTCCAGCTGCTTTCCAGCGAAGATCAGACGCTGCTGATCTGG 1793749 Query 38207 GGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTC 38266 |||| || || |||||| || ||| ||| || |||| | ||||| || Sbjct 1793750 CGGGATTCCCTCCTTGTCCTGGATCTTTGCCTTGACGTTCTCAATCGTATCCGATGGCTC 1793809 Query 38267 AACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 ||| || | || || || || || |||| ||||||||||| |||||||| Sbjct 1793810 AACCTCCAGAGTGATGGTCTTTCCGGTCAGAGTTTTCACGAAAATCTGCAT 1793860 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334935676036913