Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20quadriannulatus_20[genbank_20GCA_5F000349065.1_202013- 03-28] 2,823 sequences; 283,828,998 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq2381 269 2e-67 seq113 131 1e-25 seq224 122 7e-23 >seq2381 Length=1337761 Score = 269 bits (298), Expect = 2e-67 Identities = 961/1481 (65%), Gaps = 46/1481 (3%) Strand=Plus/Plus Query 128775 CGACTTGTCCACGGTAAATTTAATAGCGTCCGCTGCCGGCTTGGTGCGCAAATAGTACAT 128834 || ||||||||| ||||| | || || | | || |||||||| |||| ||||||||| Sbjct 918489 CGTCTTGTCCACCGTAAACTGGATCGCATTTACGGCTGGCTTGGTACGCAGATAGTACAT 918548 Query 128835 GCCTGTTTTCAAACCGCTTTTCCAAGTGTGCATGTGAATCGTGGTCAACAATGCGTAGGT 128894 ||| ||||||||||| | ||||| || | || |||| |||| | | ||| | Sbjct 918549 GCCAGTTTTCAAACCCATCTTCCAGCCGTAGAAATGGATCGACGTCAGCTTGCCATAGTT 918608 Query 128895 GGGTTGACTCaaaaaaaTATTAAATGATTGACTTTGATCAATAAAGGGGCCGCGATCGGC 128954 || | | ||| || || ||||| ||||| ||||| | || ||||| || Sbjct 918609 TGGCTCCGCGACGTGAATGTTGAACGATTGCGACTGATCGATAAACGCACCACGATCTGC 918668 Query 128955 AGCCATACCAATCAAATTTTTCACTTTCATTTCCCACACCGTTTTGTAAAGCTCTCTCAC 129014 ||||| || | ||||||| || ||||| ||||||||||| || || | | Sbjct 918669 GGCCATTTTGATGCACGTTTTCACCGAGATCTCCCATACCGTTTTGTACAGGTCGCGAAT 918728 Query 129015 GTGTTTTGGTATTTCTTCAATGTTCTGCA-CGCTGCCGTTGTTTGCAATAATTTTGTTTC 129073 | | ||||| | |||| || || | || | || ||||| | | ||||| ||| Sbjct 918729 TTCCTGCGGTATAGCCGCAATCTTTTGGATCGAT-CCATTGTTGGACAGAATTTCGTTCT 918787 Query 129074 GCATCTGTTCGTTGTACAAATTCAGTTTGATCAAATCGTCGGTCAAG-TATTTGTTTATT 129132 ||| | | ||| | || ||| ||||||| | | ||| | | ||| | Sbjct 918788 TCATGTCGAGATCCCACAGACCCATGTTGGTCAAATCCT-GCAGAAGATGATGGTTCACC 918846 Query 129133 ACTTGAAAGTCACCCGCCAAAACGCGCCGAACGTAAATGTTGTTGGTGAACGGCTCAAAC 129192 || || || || |||| || ||||||| | ||||| ||| ||| ||||||| ||| Sbjct 918847 ACCTGGAACTCGCCCGACAGCACGCGCCTATTGTAAACGTTCGACGTGTACGGCTCGAAC 918906 Query 129193 GATTCATTGTTGCCTAATATTTGAGCCGTTGTCGCGGTGGGCATGTAAGCCACGCAAAGC 129252 |||||||||||||| | ||||| ||||| | || || ||||| |||| ||| Sbjct 918907 GATTCATTGTTGCCGAGAATTTGTGCCGTGGAAGCCGTCGGCATCGGGGCCAACAGCAGC 918966 Query 129253 GAGTTTCGCAAACCGTGCTGTTTAATG-TCtttt--tttAATTGTGTCCAGTCCCACATC 129309 || || || | |||||| ||| | |||||| || || | | ||||| ||||| Sbjct 918967 GAATTGCGAATACCGTG---TTTGGCGATCTTTTCCTTCAACTCGGCCCAGTTCCACA-- 919021 Query 129310 GAT--GTGGGTGTGTGATTCCACAAGTCGTATTGCAATATACCCAAACTGGCGGGACTGG 129367 ||| || ||| | ||||||| ||||| ||||| || ||| || | |||||| Sbjct 919022 GATCCGTCGGTTCCTTGTTCCACATCTCGTACTGCAAGATGCCCTTGCTCACCGGACTGC 919081 Query 129368 AAAAGTAGGAATCGTGCACGCCGTA---AGCTTTTGCCAATTCGCAACTCGCTTCCAATG 129424 ||| | |||| | || | ||| ||||| || || |||||||||| | Sbjct 919082 CCTCGTACGTCTCGTACGGACCATCTCGAGCG---GCCAACTCACAGCTCGCTTCCAGCG 919138 Query 129425 CGCCAAAATAAATTGTTTCGGCAAT-TTTGGTGTTCAACACTTTG-GCCTGGTCGCTTTC 129482 |||| | || || |||||| ||| |||| || | | |||| |||| |||||||| Sbjct 919139 CGCCGTAGTAGATAGTTTCG--AATATTTGCTGATTTAGCTTTTGAGCCTCTTCGCTTTC 919196 Query 129483 GTACGGCATA-CGCAACATGGCAAATGTGTCGGCCAAACCTTGAATACCCACACCGATGG 129541 |||||| ||| |||| || | || | ||||||| ||||| | || | ||||| | Sbjct 919197 GTACGG-ATAGCGCATCAGGATGAACGCATCGGCCATGCCTTGCACGCCGATCCCGATCG 919255 Query 129542 GTCGATGTTTTCTATTGGATTTTTGTGCCGACAACAAGGGATAGTAGTTGATGTCTATAA 129601 | | || ||||||| | ||| | || ||||||||| |||| || || | Sbjct 919256 GCCTGTGGCGCATATTGGAGCGCTTAGCCTCCGGCACGGGATAGTAATTGACATCAATGA 919315 Query 129602 TTTTGTTTAAATTCTTGACCACAATTTTCGTTACGTATTTTAACATTTCAAAATTGTAC- 129660 ||||||| | ||| ||| | || | || | || | | || |||| | ||| Sbjct 919316 TTTTGTTCAGATTGCGCGTCACTGTCTTAGCGACTTCCTTCAGCTTTGCAAAGTCATACG 919375 Query 129661 --TCGCCTACATCGATGTCGACAAATTGATTGACACAAATCGAGGCCAAATTGCAGACGG 129718 | | || | | | ||||| || | |||||||||| |||||| || | Sbjct 919376 TTTTGTCTT----GCTTT--ACAAACATGTTCAAGGCGATCGAGGCCAGATTGCATACCG 919429 Query 129719 CACTTTCGTTTTTGTCACTGTACTCGACAATTTCGGCGCACAAATTACTATTTTTAATGG 129778 | || | || |||||| ||||| || | |||||| || | ||| |||| Sbjct 919430 CTACCTCATCCTTCGACGAGTACTCCACAATCTCAGTGCACAAGTTGGAACATTTGATGG 919489 Query 129779 TGCCCAAATGCTTTTGATTACTTTTCATGTTGCAAGCATCTTTGTACATCATGTACGGCG 129838 |||| | || || || |||||||| ||||||||||| ||||||| |||||||||| Sbjct 919490 TGCCGATATTCTGCTGGTTACTTTTACGATTGCAAGCATCCTTGTACAGCATGTACGGCA 919549 Query 129839 TGCCCGTTTCGACTTGCGTTTCGACAATGGTCCTGAACAAGTCTCGAGCCTTGATCTGTC 129898 ||| ||||| ||||||| ||||| || | ||| || | ||||| | ||||| Sbjct 919550 CGCCGGTTTCCACTTGCGATTCGATTATCGCAAACCACAGATCCTGCGCCTTCACCTGTC 919609 Query 129899 TTACAAATTTGCCACATTTCTCGTATGCCACATACAGTTGTTCAAATTCTGAGCC----G 129954 | ||| || ||||||||| || ||||| | || || ||| ||| | Sbjct 919610 GCATAAAGCGACCCTCTTTCTCGTACCCCGTGTACAGCTTCTCGAACTCTTCGCCCCAGG 919669 Query 129955 TGTACGGTGTCGAGCAACGGCGATTCACGCGGACACATCAAACTCCACATTCCATCCGCT 130014 ||| || | ||| || | || |||| ||||||| ||||||||| | | ||| Sbjct 919670 TGTCCGAT----AGCCCGGGACAATCGTGCGGGCACATCAGGCTCCACATTTCGTTCGCC 919725 Query 130015 TCGACTCGTTTCATAAACAAATCGGGTACCCACAGGGCGTACAACAAATCTCGCGCTTTT 130074 || || || | ||| |||| || |||| |||||| ||||| |||| || || || Sbjct 919726 TCCACACGCTGCATGAACAGGTCCGGTATCCACAGTGCGTAAAACATGTCCCGTGCGCGG 919785 Query 130075 CTATCCTCGGCACCCATGTTACGTTTCAGTTCAAGGAAATCGTAAATGTCGGCGTGCCAC 130134 ||||| || |||| ||||| || || || ||| | || ||| | |||||| Sbjct 919786 ACCTCCTCCTTGCCGGTGTTTTTCTTCAGATCGAGAAACTCGAATATATCGCCATGCCAC 919845 Query 130135 GGTTCAACATAAATTGCCATTGCGCCCTTCCGTTTG---CCCCCTTGGTCAACGTGGCGC 130191 || || | ||| || || | ||| || ||| ||| || || || || |||| || Sbjct 919846 GGCTCGAGATAGATGGCGAATGCTCCAGGCCGCTTGTTACCGCCCTGATCGACGTACCGT 919905 Query 130192 ACGGCATTGTTGTAGACTCGCAACATTGCCTCCAATCCGTT 130232 | | |||||||||||| |||||||| | | ||| ||||| Sbjct 919906 GCCGTATTGTTGTAGACGCGCAACATCGGCACCAGACCGTT 919946 >seq113 Length=3238079 Score = 131 bits (144), Expect = 1e-25 Identities = 168/232 (72%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 22215 AAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAAC 22274 ||| ||||| ||||| || ||||| | ||||| || || |||| ||||| || || | Sbjct 1949310 AAACATGCAGATTTTCGTGAAAACACTCACCGGCAAGACCATCACACTTGAGGTCGAGCC 1949251 Query 22275 CACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGA 22334 | || || | || || | || ||| || || |||||||| || ||||| || || Sbjct 1949250 TTCGGACACGATCGAGAATGTGAAGGCAAAGATCCAGGACAAGGAAGGCATTCCCCCAGA 1949191 Query 22335 TCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTA 22394 ||| || ||||| || || |||||||| ||| | |||||| ||||| ||||||| || Sbjct 1949190 TCAGCAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGATGGTCGCACTCTCTCCGACTA 1949131 Query 22395 CAACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 ||||||||| || ||||| ||| | ||| | || ||||| | || || ||| Sbjct 1949130 CAACATTCAGAAGGAATCGACCCTTCATCTGGTGCTGCGACTCCGTGGTGGT 1949079 Score = 123 bits (136), Expect = 2e-23 Identities = 166/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 |||||||| || || || ||||| | || ||||| || | || ||||| || || || Sbjct 854704 AAGATGCAGATCTTCGTCAAAACCCTCACGGGTAAGACCATTACCCTTGAGGTCGAGCCC 854763 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 | ||||| | || || | || || || || ||||||||||| || || || ||| Sbjct 854764 TCGGATACGATCGAGAATGTGAAGGCGAAGATCCAGGACAAGGAGGGAATCCCGCCAGAT 854823 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 || || ||||| || || |||||||| ||| | |||||| |||||| | ||||| ||| Sbjct 854824 CAGCAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGATGGCCGCACGCTGTCCGACTAC 854883 Query 22396 AACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 ||||| || || || || ||| | ||| | || |||| ||||||| ||| Sbjct 854884 AACATCCAGAAGGAGTCGACCCTTCATCTGGTGCTGCGCCTGCGCGGTGGT 854934 >seq224 Length=3387546 Score = 122 bits (134), Expect = 7e-23 Identities = 166/232 (72%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 22215 AAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAAC 22274 ||| ||||| ||||| || |||||| | ||||| || || |||| || || || ||| | Sbjct 1794092 AAATATGCAGATTTTCGTGAAAACTCTGACCGGAAAGACCATCACCCTCGAGGTCGAACC 1794033 Query 22275 CACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGA 22334 ||||||| | || || | || || || || ||||||||||| || || || || Sbjct 1794032 ATCCGATACGATTGAGAATGTGAAGGCGAAGATCCAGGACAAGGAGGGAATCCCGCCAGA 1793973 Query 22335 TCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTA 22394 ||| || ||||| || || || || || ||| | |||||| ||||||| | || || || Sbjct 1793972 TCAGCAGCGTCTGATCTTCGCTGGAAAGCAGCTGGAGGATGGCCGCACCCTGTCGGACTA 1793913 Query 22395 CAACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 ||||| || || || |||||| | ||| | ||| | || |||| || ||| Sbjct 1793912 TAACATCCAGAAGGAGTCCACCCTTCATCTGGTTCTCCGTCTGCGTGGTGGT 1793861 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| ||||| || |||||| | ||||| || || ||||||| || || || | | Sbjct 1793860 ATGCAGATTTTCGTGAAAACTCTGACCGGAAAGACCATCACTCTGGAGGTTGAGCCATCG 1793801 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | || | |||| ||| || || ||||||||||| || || || ||||| Sbjct 1793800 GATACGATTGAGAACGTCAAGGCAAAGATCCAGGACAAGGAGGGAATCCCGCCAGATCAG 1793741 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || || || || || ||| | || ||| ||||||| | || || || ||| Sbjct 1793740 CAGCGTCTGATCTTCGCTGGAAAGCAGCTGGAAGATGGCCGCACCCTGTCGGACTATAAC 1793681 Query 22399 ATTCAAAAAGAATCCAC 22415 || || || |||||||| Sbjct 1793680 ATCCAGAAGGAATCCAC 1793664 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419713559126995