Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20quadriannulatus_20[genbank_20GCA_5F000349065.1_202013- 03-28] 2,823 sequences; 283,828,998 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq2001 205 2e-47 seq224 156 8e-33 seq113 152 9e-32 seq2314 84.2 4e-11 >seq2001 Length=1904535 Score = 205 bits (226), Expect = 2e-47 Identities = 369/537 (69%), Gaps = 2/537 (0%) Strand=Plus/Minus Query 268258 CCACATTGCTTCGACATAGTCCCGCGCATGGCCCCAATCGCGCTTTGCGTCCATGTTCCC 268317 |||||| || ||||| |||||| ||| |||||||| |||||||| | ||| | || || Sbjct 860878 CCACATCGCCTCGACGTAGTCCTTCGCGTGGCCCCAGTCGCGCTTCGAGTCGAGATTGCC 860819 Query 268318 GAGGAACAGGCATTTCTGCTTGCCGAGCTTCACGCGTGCAAGACCGCGAGTGATTTTTCG 268377 || |||| | | ||||| ||||||| | || | ||| |||||||| || Sbjct 860818 CAGCTCCAGGTACTCCTGCTGGCCGAGCGAAATCTTGGCCACCGAGCGGGTGATTTTGCG 860759 Query 268378 GGTCACGAACGTCTCGCCACGTAGAGGGCTCTCGTGGTTGAAGAGGATGCCGTTGCACGC 268437 |||||||| |||| || || | || |||||| ||||| |||||||||||||| || Sbjct 860758 CGTCACGAAGTTCTCCCCCCGGCGCGGCGACTCGTGATTGAACAGGATGCCGTTGCAGGC 860699 Query 268438 GAACATGCCATATGCCTCACGGTAGTTCACGACCGTCCAGTATGCAAACATCTTTGCAAC 268497 ||||||| | || || || || ||||| | || ||||||| | ||||||| ||| Sbjct 860698 GAACATGTCGTACGCTTCGCGATAGTTGATCACAATCCAGTAGCCGTACATCTTGGCACA 860639 Query 268498 TGCGTACGGAGAACGTGGATGGAAGGGCGTCGTGATCTTTTGAGGGATTTCTCGGACTTT 268557 |||||||| || || |||| ||| || ||| | || || || | || || || Sbjct 860638 CGCGTACGGCGAGCGGGGATAGAACGGGGTCTTTTCGTTCTGGGGCGTCTCCGCCACCTT 860579 Query 268558 GCCAAAGAGCTCGGAGGTCGATGCTTGGTAGAACTTTGTTGTTTTTTCGAGACCGCAGAT 268617 ||| | |||||||| |||||||| |||||||| || || | || | Sbjct 860578 GCCGTACAGCTCGGACGTCGATGCCTGGTAGAAGCGGACCGTCCGCTCCTGCCCCACCGT 860519 Query 268618 TCGGATTGCCTCGAGCAAACGAAGAGTTCCCATGCCATCCACGTCCGCTGTATACTCCGG 268677 ||||| || ||||||| || || || || | ||||||| ||||| || ||||| Sbjct 860518 ACGGATGGCATCGAGCAGCCGGAGCGTACCGACCGCATCCACCTCCGCCGTGTACTCGCT 860459 Query 268678 CATCTCGAATGACACCTGGACATGGCTCTGGGCGCCCAGGTTATAAACCTCATCCGGTTT 268737 || ||||| || | || || |||||||||||| ||||||| || | || ||| Sbjct 860458 CAGATCGAACGAAATCTTCACGTGGCTCTGGGCGGCCAGGTTGTATATTTCGGACGGGCG 860399 Query 268738 GACCTGCTGCACGATCTTCACGAGGTTCGTTG-AGTCGGTGAGGTCTCCGTAGTGCA 268793 ||||| | ||| ||||| | | || || |||||| | ||| |||||||||| Sbjct 860398 CACCTGGGCAATGATTTTCACCA-GCGCGCTGCTGTCGGTCATGTCGCCGTAGTGCA 860343 Score = 84.2 bits (92), Expect = 4e-11 Identities = 104/140 (74%), Gaps = 7/140 (5%) Strand=Plus/Minus Query 9895 AGAAGTCTGCGTCAATTGCAAACACGTTGTC--GTCGGCATT---CATGACGCCCGCCTT 9949 |||| || || || | | |||||||||||| | ||| || ||| |||||| ||| Sbjct 1560762 AGAAATCCGCATCGAGCGTAAACACGTTGTCCAGCCGG--TTGGCCATCACGCCCCACTT 1560705 Query 9950 CTGGTACTCCGATACCCGGCGCTCGAAGAAGTTGGACTTGCCCTCGAGGGAAATGAGCTC 10009 ||||||||| ||| |||||||||||| | |||||||||||| || |||| ||| Sbjct 1560704 CTGGTACTCGCCAACCTTCTTCTCGAAGAAGTTCGTCTTGCCCTCGAGCGAGATGAACTC 1560645 Query 10010 CATGAAGTCAAAGGGGTTCT 10029 ||||||| || ||||||| Sbjct 1560644 CATGAAGCTGAACGGGTTCT 1560625 >seq224 Length=3387546 Score = 156 bits (172), Expect = 8e-33 Identities = 175/234 (75%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 68228 TTAATTTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATA 68287 ||||||||| || || || || | |||| || || ||||| || || ||||||||||| Sbjct 1793627 TTAATTTCCACCACGCAGACGGAGCACCAGATGAAGAGTGGATTCCTTCTGGATGTTATA 1793686 Query 68288 ATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTC 68347 || || || || | |||||||| | |||||| || ||||| || || | || || || Sbjct 1793687 GTCCGACAGGGTGCGGCCATCTTCCAGCTGCTTTCCAGCGAAGATCAGACGCTGCTGATC 1793746 Query 68348 GGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGA 68407 || || || || |||||||| || ||||||||||||||| ||| || || || | || Sbjct 1793747 TGGCGGGATTCCCTCCTTGTCCTGGATCTTTGCCTTGACGTTCTCAATCGTATCCGATGG 1793806 Query 68408 TTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || || |||| |||||||| ||||| || || || || ||||| |||||||| Sbjct 1793807 CTCAACCTCCAGAGTGATGGTCTTTCCGGTCAGAGTTTTCACGAAAATCTGCAT 1793860 Score = 134 bits (148), Expect = 3e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || || | |||| || || |||||||| || ||||||||||| || || Sbjct 1793862 CCACCACGCAGACGGAGAACCAGATGAAGGGTGGACTCCTTCTGGATGTTATAGTCCGAC 1793921 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || | |||||| || ||||| || || | || || || || || Sbjct 1793922 AGGGTGCGGCCATCCTCCAGCTGCTTTCCAGCGAAGATCAGACGCTGCTGATCTGGCGGG 1793981 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || |||||||| || ||||| ||||| || ||| || || || | || ||| || Sbjct 1793982 ATTCCCTCCTTGTCCTGGATCTTCGCCTTCACATTCTCAATCGTATCGGATGGTTCGACC 1794041 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | ||||||||| ||||| || || || || ||||| |||||||| Sbjct 1794042 TCGAGGGTGATGGTCTTTCCGGTCAGAGTTTTCACGAAAATCTGCAT 1794088 >seq113 Length=3238079 Score = 152 bits (168), Expect = 9e-32 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || ||||| ||||||| |||| || || || ||||| || |||||||| || ||||| Sbjct 854933 CCACCGCGCAGGCGCAGCACCAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAC 854874 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || | |||||| |||||||| || || | || || || || || Sbjct 854873 AGCGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGCGGG 854814 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || |||||||| || ||||| ||||| || |||||| || || | | || || Sbjct 854813 ATTCCCTCCTTGTCCTGGATCTTCGCCTTCACATTCTCGATCGTATCCGAGGGCTCGACC 854754 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | ||| ||||| || ||||||||||| |||||||| |||||||| Sbjct 854753 TCAAGGGTAATGGTCTTACCCGTGAGGGTTTTGACGAAGATCTGCAT 854707 Score = 150 bits (166), Expect = 3e-31 Identities = 173/233 (74%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 68229 TAATTTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAA 68288 || || || || || || |||| |||| || || || || || || || ||||| || Sbjct 1949074 TACTTACCACCACGGAGTCGCAGCACCAGATGAAGGGTCGATTCCTTCTGAATGTTGTAG 1949133 Query 68289 TCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCG 68348 |||||||| || | ||||| || | |||||| |||||||| || || | || || || Sbjct 1949134 TCGGAGAGAGTGCGACCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCT 1949193 Query 68349 GGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGAT 68408 || ||||||||||||||||| || ||||||||||| || |||||| ||||| | | Sbjct 1949194 GGGGGAATGCCTTCCTTGTCCTGGATCTTTGCCTTCACATTCTCGATCGTGTCCGAAGGC 1949253 Query 68409 TCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || || || | |||||||| || || ||||| || || ||||| |||||||| Sbjct 1949254 TCGACCTCAAGTGTGATGGTCTTGCCGGTGAGTGTTTTCACGAAAATCTGCAT 1949306 >seq2314 Length=1386859 Score = 84.2 bits (92), Expect = 4e-11 Identities = 111/151 (74%), Gaps = 6/151 (4%) Strand=Plus/Minus Query 196592 ACGGAAACATTTGCGATGGGCGTCAACGGGCCTGCGAGGACCGTCGTCTTCGA--GT-CG 196648 ||||| || |||||||||||||| ||| ||| ||| | || ||| |||| || || || Sbjct 516229 ACGGAGACGTTTGCGATGGGCGTTAACATGCCCGCGCGCACGGTCATCTTTGACAGTACG 516170 Query 196649 CTCGAGAAGTTCGATGGACACGAGCGCCGCATGTTCCAGCCGCACGAGTTCATCCAAATG 196708 | | ||||||||||| || | | ||| | | || ||| ||||| || || ||| Sbjct 516169 CGC---AAGTTCGATGGGCAGGCGTTCCGGCCGCTGCAACCGTCCGAGTACACGCAGATG 516113 Query 196709 GCGGGCCGGGCCGGGCGCCGAGGGTTTGACA 196739 ||||||||||||||||| || || | |||| Sbjct 516112 GCGGGCCGGGCCGGGCGGCGCGGTCTCGACA 516082 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921589878249560