Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20quadriannulatus_20[genbank_20GCA_5F000349065.1_202013- 03-28] 2,823 sequences; 283,828,998 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq2381 288 2e-72 seq2001 241 2e-58 >seq2381 Length=1337761 Score = 288 bits (318), Expect = 2e-72 Identities = 930/1427 (65%), Gaps = 64/1427 (4%) Strand=Plus/Plus Query 244090 GTTCACCACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGG 244149 |||||||||||| ||||| |||||||||||||| | | ||| | ||| || ||| Sbjct 918840 GTTCACCACCTGGAACTCGCCCGACAGCACGCGCCTATTGTAAACGTTCGACGTGTACGG 918899 Query 244150 CTCGATGCTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACAC 244209 ||||| || ||||||| || || || |||||| || |||||||| || | || Sbjct 918900 CTCGAACGATTCATTGTTGCCGAGAATTTGTGCCGTGGAAGCCGTCGGCATCGGGGCCAA 918959 Query 244210 CAGCAGACTGTTCCTCACGCCGTGCCTCTGGATGCGGAGTCTGAGCTCGTTCCAGTCCCA 244269 |||||| || | | ||||| | ||| | | |||| ||||| ||| Sbjct 918960 CAGCAGCGAATTGCGAATACCGTGTTTGGCGATCTTTTCCTTCAACTCGGCCCAGTTCCA 919019 Query 244270 CATGCCCGAGAGGTCCTCGCGTTTGAGGCCCCACATGTCAAACTGCAGCAGCCCCTTGCT 244329 || ||| | |||| | || |||||| || |||||| | |||||||| Sbjct 919020 CAGATCCGTCGGTTCCTTG---TT------CCACATCTCGTACTGCAAGATGCCCTTGCT 919070 Query 244330 GACGGGGCTGCCCTCGTAGGTCGGGTAGGGACCGTCGCGCTGGGCCAGCTTACAGCTCTC 244389 || || ||||||||||| ||| ||| ||||| || || ||||| || ||||||| | Sbjct 919071 CACCGGACTGCCCTCGTACGTCTCGTACGGACCATCTCGAGCGGCCAACTCACAGCTCGC 919130 Query 244390 GTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGTCGC----GGGCCT 244445 || || ||| |||||||||| || ||||| || ||| | || | || | |||| Sbjct 919131 TTCCAGCGCGCCGTAGTAGATAGTTTCGAATAT----TTGCTGATTTAGCTTTTGAGCCT 919186 Query 244446 TGCCGCAGGTGAAGGGGATGCCCATCATCATGAAGACGTCGGCCAGTCCCTGCACGCCGA 244505 ||| | | || || ||||| ||||| | ||||||| || |||||||||| Sbjct 919187 CTTCGCTTTCGTACGGATAGCGCATCAGGATGAACGCATCGGCCATGCCTTGCACGCCGA 919246 Query 244506 TGCCGATGGGTCTGTGTCGCTTGTTGGAGCGCATGGCTTCGGGCACGGGGTAAAAGTTGC 244565 | ||||| || ||||| ||| | ||||||||| | || || |||||||| || | ||| Sbjct 919247 TCCCGATCGGCCTGTGGCGCATATTGGAGCGCTTAGCCTCCGGCACGGGATAGTAATTGA 919306 Query 244566 CGTCGATCACCTTGTTGAGGTTGCGGGTGATCATGCGGACGACGTCGGCCAGCAGCTGAA 244625 | || || | ||||| || ||||| || | | |||| || |||| || Sbjct 919307 CATCAATGATTTTGTTCAGATTGCGCGTCACTGTCTTAGCGACTTCCTTCAGCTTTGCAA 919366 Query 244626 AGTCGTACTCGTAGGGATCCTCGGCGATGGTGATCCTCACAAACTCGTTGAGGGCGACGC 244685 |||| ||| | | | || | |||||| ||| | ||||| Sbjct 919367 AGTCATACGTTTTGTCTTGCT---------------TTACAAACATGTTCAAGGCGATCG 919411 Query 244686 TGGCCAGGTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGA 244745 |||||| ||||| || || ||||| ||| | ||||| |||||||| ||||| | Sbjct 919412 AGGCCAGATTGCATACCGCTACCTCATCCTTCGACGAGTACTCCACAATCTCAGTGCACA 919471 Query 244746 GGTTACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGG-CG-TTGCAGGCGTC 244803 ||| || ||||||||||| | | ||| || || |||| || ||||| || || Sbjct 919472 AGTTGGAACATTTGATGGTGCCGATATTCTGCTGGTT--ACTTTTACGATTGCAAGCATC 919529 Query 244804 CTTGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGA-CGCTGTTCCAGA 244862 |||||| |||||| | ||| | ||||| || | || | ||| | ||| ||| | Sbjct 919530 CTTGTACAGCATGTACGGCACGCCGGTTTCCACTTGCGATTCGATTATCGCAAA-CCACA 919588 Query 244863 GGTCCCTAGCCTTGACC-GTC-CTGCGAGCCTTGCCCTCTGCCTCGTAGCGGGTGTACAG 244920 | ||| ||||| ||| ||| | ||| |||||| |||||| | |||||||| Sbjct 919589 GATCCTGCGCCTTCACCTGTCGCATAAAGCGA--CCCTCTTTCTCGTACCCCGTGTACAG 919646 Query 244921 GGCCTCGAACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCACGACGCCGGGCACATGAG 244980 ||||||||| ||||||| || ||| ||||| || ||||||||| || Sbjct 919647 CTTCTCGAACTCTTCGCCCCAGGTGTCCGATAGCCCGGGACAATCGTGCGGGCACATCAG 919706 Query 244981 ACTCCAC---TCGC-CGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGG 245036 |||||| ||| |||| ||| || | ||||||||| ||||| || ||||| || | Sbjct 919707 GCTCCACATTTCGTTCGCC-TCC---ACACGCTGCATGAACAGGTCCGGTATCCACAGTG 919762 Query 245037 CCTGGAAGAGGTCCCTGGTCCTCTG--CTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAA 245094 | | || | ||||| || | | | ||| ||| ||| ||||| ||| |||| || | Sbjct 919763 CGTAAAACATGTCCC--GTGCGCGGACCTCCTCCTTGCCGGTGTTTTTCTTCAGATCGAG 919820 Query 245095 AAAGTCAAAGACGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTT 245154 ||| || || | ||| | ||||| ||||| | |||| |||| || || |||||||| Sbjct 919821 AAACTCGAATATATCGCCATGCCACGGCTCGAGATAGATGGCGAATGCTCCAGGCCGCTT 919880 Query 245155 GTTGCCTCCCTGGTCCACCATCCTCTCGAGCGCGTTGAAGATGCGCAGGGTAGGCACTAT 245214 ||| || ||||| || || || | |||| ||| ||||| | ||||| | Sbjct 919881 GTTACCGCCCTGATCGACGTACCGTGCCGTATTGTTGTAGACGCGCAACATCGGCACCAG 919940 Query 245215 GCCGTTAGAGTGGCCGTTGGTGCCCTTGATGTAGGCGCCCTTGCCCCTGAGGTTGCTGAT 245274 ||||| || ||||| || || |||||| | ||||| | | | | | Sbjct 919941 ACCGTTTGAAATCCCGTTCGTACCGGAGATGTACGTTCCCTTCGCGCGAATACAGTGCAC 920000 Query 245275 GGACATGCCTAGTCCGCCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGGTGTCTGC 245334 | || || | || ||||| ||| || || ||||| || ||| | ||||| Sbjct 920001 GTTCAGTCCGATGCCACCGGCCGACTTTGAAATTAGGGCACACTGCTTCAGCGTGTCGTA 920060 Query 245335 TATGCCCTCCATGCTGTCCGACTTCATGTTGAGCAGAAAGCAGGAGGACAGCTGGGGCTT 245394 |||||||| ||||| || |||| | | ||| |||||||| || ||||||| Sbjct 920061 GATGCCCTCAATGCTATCTTCGGACATGGTCAACAGGAAGCAGGACGAAAGCTGGG---- 920116 Query 245395 GGGGCTGC----ACGAGTTGAACAGAGTGGGGCTGGCGTGGGTAAAGTAGCGGCTC-GAG 245449 || ||||| || |||| ||| || ||||||||||||||| | |||| || Sbjct 920117 GGCGCTGCGTAGCCGCCGCAAACATAGTTGGCGAGGCGTGGGTAAAGTAAC-GCTCGGAC 920175 Query 245450 AGGAACCCGTACGTCTGGAGCAGAGCGTCGATGTTGTCGCCGTGGAT 245496 || | ||| |||| || | || ||||||| ||||| ||||| Sbjct 920176 AGCAGATTGTAGGTCTCGATCGCTGCATCGATGTCCTCGCCATGGAT 920222 >seq2001 Length=1904535 Score = 241 bits (266), Expect = 2e-58 Identities = 320/438 (73%), Gaps = 11/438 (3%) Strand=Plus/Plus Query 42609 CTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAAC 42668 |||||||| ||||| || ||| |||| ||| | ||| |||||||||||||||||| ||| Sbjct 1560093 CTGTTCAATGCCATCGAAACGCTGCCGTGCGTGAAGCGGAAGGCGGACTGGGCGCTGAAC 1560152 Query 42669 TGGATCGAGAGTCCCGACG--CAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCG 42726 |||||| ||| | || | |||| || |||||| || | || || || | || || | Sbjct 1560153 TGGATCTCGAG-CAAGAAGGCCAAC-TTTGGCGAGCGGGTCGTGGCATTCGCTGCGGTTG 1560210 Query 42727 AGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGAAGGTGTC-- 42784 |||| ||||||||| ||| ||||||| | ||||||||||| ||| || ||| | Sbjct 1560211 AGGGTATCTTCTTCAGCGGCAGCTTCGCCGCGATCTTCTGGCTGAAG--AAACGTGGCCT 1560268 Query 42785 GATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCATAGGGA 42844 |||||| |||||||||||||||||||| || ||| | ||||| |||||||| | || Sbjct 1560269 GATGCCAGGACTCACCTTCTCGAACGAGCTGATCTCGCGCGACGAAGGGCTGCACTGCGA 1560328 Query 42845 CTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGAAGGAGCGGGTCCG 42904 |||||||||||| ||||| | | || ||| ||||| ||||||||||| || Sbjct 1560329 CTTTGCCTGCCTGATGTTC---AAGTATCTGGTGCAGAAGCCGTCGAAGGAGCGCGTGAC 1560385 Query 42905 GGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAGTCGCTGCCCGT 42964 || |||||| || || || ||||||| |||||||||| ||| || | ||||| || Sbjct 1560386 GGAGATCATCCGCGATGCGGTCCTGATCGAGCAGGAGTTCCTGACGAAGGCACTGCCGGT 1560445 Query 42965 GTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCCAGTACGTCGCCGACCA 43024 | || | ||||||||| ||| || |||| ||||||| ||| || ||||| | Sbjct 1560446 GGATATGCTGGGCATGAACTGCGATCTGATGTCGCAGTACATTGAGTTTGTGGCCGATCG 1560505 Query 43025 TCTCCTGTGCCAGATGGG 43042 | | ||| | || |||| Sbjct 1560506 TTTGCTGCTCGAGCTGGG 1560523 Score = 109 bits (120), Expect = 1e-18 Identities = 177/253 (70%), Gaps = 4/253 (2%) Strand=Plus/Plus Query 42335 CTGGACCGCCGAGGAGATTGACCTGGCCAAGGACACGGCCGGCTGGGAGTCACTGTCTGA 42394 |||||| | || || |||| ||| ||||||| | | | |||||||| ||| Sbjct 1559713 CTGGACGGTGGAAGAAGTTGATCTGTCCAAGGATATGAAGGATTGGGAGTCGCTGAAACC 1559772 Query 42395 GAACGAAAAGTTTTTCCTCAAAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGT 42454 || |||| ||| || || | ||||||||||| || || || ||||| || || Sbjct 1559773 GAGCGAACGCCACTTCATCTCCCACGTGCTGGCCTTCTTTGCTGCGTCCGACGGTATCGT 1559832 Query 42455 CAATGAGAACCTGGCCACCAGGTTCATGAAAGAGGTGCAG--TACTTTGAGGCGCGCTGC 42512 || ||||| |||| | |||| | ||||||||| ||| |||||||||||| Sbjct 1559833 GAACGAGAATCTGGTGGAACGCTTCAGCCAGGAGGTGCAGGTTAC--GGAGGCGCGCTGC 1559890 Query 42513 TTCTACGGCTTCCAGATAGCCATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTC 42572 ||||||||||||||||| || || || || |||||| ||| ||||| | ||| || Sbjct 1559891 TTCTACGGCTTCCAGATTGCGATGGAAAATGTGCACAGCGAGATGTACTCGCTGCTGATC 1559950 Query 42573 AACACGTACATCC 42585 |||||||||||| Sbjct 1559951 GACACGTACATCC 1559963 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944305876630480