Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20quadriannulatus_20[genbank_20GCA_5F000349065.1_202013- 03-28] 2,823 sequences; 283,828,998 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq890 104 2e-17 seq224 93.3 3e-14 seq113 93.3 3e-14 >seq890 Length=3078589 Score = 104 bits (114), Expect = 2e-17 Identities = 195/280 (70%), Gaps = 9/280 (3%) Strand=Plus/Minus Query 37831 ACGATCTCTTGTGGAACGCGGCTCAAATTCAGCTTGTGCGCGAGGGTAAGATGCATCAGT 37890 ||||||| ||||||| |||| || | ||| | ||| ||||| |||||||| | Sbjct 487907 ACGATCT---GTGGAACTCGGCCCAGCTGCAGATGGTGAAGGAGGGCAAGATGCACGGCT 487851 Query 37891 ATATGCGCATGTATTGGTGCAAGAAAATTTTGGAATGGTCTGATGATGCTC--AGACCGC 37948 |||||||||| ||| ||| || || |||| ||| | || | || | ||| || Sbjct 487850 TCCTGCGCATGTACTGGGCCAAAAAGATCCTGGAGTGGAC-GAAAACGCCCGAAGAA-GC 487793 Query 37949 GCTCAACTACGCCATTTATCTCAATGATAAGTACAGCTTGGACGGGCGTGATCCCAACGG 38008 ||| | || || ||||| || ||| ||||| |||| ||||| ||||| ||||| Sbjct 487792 GCTTGAGACGGCGATCTATCTGAACGATCGCTACAGTCTGGATGGGCGCGATCCGAACGG 487733 Query 38009 TTACGTCGGCTGTTTGTGGTCTATATGCGGGC-TACACGATAGAGCCTGGCGCGAGATTC 38067 |||||||| || ||||||| || |||||| | |||||| | |||| ||| Sbjct 487732 GTACGTCGGTTGCATGTGGTCGATC-GCGGGCATCCACGATCAGGGCTGGAAGGAGCGCG 487674 Query 38068 CCATTTACGGCAAGATTCGGTACATGAACTACAACGGATG 38107 || | ||||| ||||||||||||||||| ||||||| Sbjct 487673 AAATCTTTGGCAAAATTCGGTACATGAACTATGACGGATG 487634 >seq224 Length=3387546 Score = 93.3 bits (102), Expect = 3e-14 Identities = 166/240 (69%), Gaps = 2/240 (1%) Strand=Plus/Plus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 ||| || | ||| || || ||||||||||| ||| ||||||||| ||||| || || | Sbjct 1793861 ACCACCACGCAGACGGAGAACCAGATGAAGGGTGGACTCCTTCTGGATGTTATAGTCCGA 1793920 Query 33960 CAATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 || || | || |||| ||||| || || || ||||| ||||||||||| ||| Sbjct 1793921 CAGGGTGCGGCCATCCTCCAGCTGCTTTCCAGCGAAGATCAGACGCTGCTGATCTGGCGG 1793980 Query 34020 CACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTCACAC-TATCAGTAGATTCGC 34078 | | ||| |||||| || || ||| | |||| | |||| | | |||| Sbjct 1793981 GATTCCCTCCTTGTCCTGGATCTTCGCCTTCA-CATTCTCAATCGTATCGGATGGTTCGA 1794039 Query 34079 ATTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCATTTTTAATATGT 34138 |||| || || || |||||||| || |||||||| || || ||||| ||| || ||| Sbjct 1794040 CCTCGAGGGTGATGGTCTTTCCGGTCAGAGTTTTCACGAAAATCTGCATATTTTATCTGT 1794099 >seq113 Length=3238079 Score = 93.3 bits (102), Expect = 3e-14 Identities = 102/136 (75%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 ||| || | ||| ||||||||||||||||| || ||||||||| |||||||| || | Sbjct 854934 ACCACCGCGCAGGCGCAGCACCAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGA 854875 Query 33960 CAATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 || || | || |||| ||||||||||| || ||||| ||||||||||| ||| Sbjct 854874 CAGCGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGCGG 854815 Query 34020 CACGCTCTCTTTGTCC 34035 | | ||| |||||| Sbjct 854814 GATTCCCTCCTTGTCC 854799 Score = 87.8 bits (96), Expect = 1e-12 Identities = 157/224 (70%), Gaps = 4/224 (2%) Strand=Plus/Plus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCA-ATTGTCG 33968 || ||||||||||||||||| || ||||||||||||||||| || | | | || || Sbjct 1949089 AGTCGCAGCACCAGATGAAGGGTCGATTCCTTCTGAATGTTGTAGTCGGAGAGAGTG-CG 1949147 Query 33969 CTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTC 34028 | || |||| ||||||||||| || ||||| ||||||||||| || | || || Sbjct 1949148 ACCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGAATGCCTTC 1949207 Query 34029 TTTGTCCATAATTTTTTGCTTAATGGAACTC-ACACTATCAGTAGATTCGCATTCGACCG 34087 |||||| || ||| ||| | ||| | | || | || ||| || | | Sbjct 1949208 CTTGTCCTGGATCTTTGCCTTCA-CATTCTCGATCGTGTCCGAAGGCTCGACCTCAAGTG 1949266 Query 34088 TTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCATTTTT 34131 | || || || ||||| ||||||||||| || || ||||| ||| Sbjct 1949267 TGATGGTCTTGCCGGTGAGTGTTTTCACGAAAATCTGCATGTTT 1949310 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397048738944046