Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20quadriannulatus_20[genbank_20GCA_5F000349065.1_202013- 03-28] 2,823 sequences; 283,828,998 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq224 161 2e-34 seq113 132 1e-25 >seq224 Length=3387546 Score = 161 bits (178), Expect = 2e-34 Identities = 180/238 (76%), Gaps = 7/238 (3%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || || | || || ||||||| ||| || || ||||| |||||||| | Sbjct 1793862 CCACCACGCAGACGGAGAACCAGATGAAGGGTGGACTCCTTCTGGATGTTATAGTCCGAC 1793921 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT--- 288363 || ||||| || || || | || ||||| ||||||||||||||||| || |||| Sbjct 1793922 AGGGTGCGGCCATCCTCCAGCTGCTTTCCAGCGAAGATCAGACGCTGCTG---ATCTGGC 1793978 Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 |||||||| || || |||||||| ||||| ||||| || || || | |||| | ||| Sbjct 1793979 GGGATTCCCTCCTTGTCCTGGATCTTCGCCTTCACATTCTCAATCGTATCGGATGGTTCG 1794038 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTATGTTAT 288481 || ||||| ||||| ||||| ||||||||||| || ||||| ||||||| ||| |||| Sbjct 1794039 ACCTCGAGGGTGATGGTCTTTCCGGTCAGAGTTTTCACGAAAATCTGCA-TATTTTAT 1794095 Score = 154 bits (170), Expect = 3e-32 Identities = 178/237 (75%), Gaps = 12/237 (5%) Strand=Plus/Plus Query 288243 ATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTC 288302 || |||||| || || | || || ||||||| ||| ||| || ||||| |||||||| Sbjct 1793630 ATTTCCACCACGCAGACGGAGCACCAGATGAAGAGTGGATTCCTTCTGGATGTTATAGTC 1793689 Query 288303 GGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATC 288362 | || ||||| || ||||| | || ||||| ||||||||||||||||| || ||| Sbjct 1793690 CGACAGGGTGCGGCCATCTTCCAGCTGCTTTCCAGCGAAGATCAGACGCTGCTG---ATC 1793746 Query 288363 T---GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGA 288419 | |||||||| || || |||||||| || || || ||||| || || | ||| ||| Sbjct 1793747 TGGCGGGATTCCCTCCTTGTCCTGGATCTTTGCCTTGACGTTCTCAATCGTATC---CGA 1793803 Query 288420 T---TCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 | || || || || ||||| ||||| ||||||||||| || ||||| |||||||| Sbjct 1793804 TGGCTCAACCTCCAGAGTGATGGTCTTTCCGGTCAGAGTTTTCACGAAAATCTGCAT 1793860 >seq113 Length=3238079 Score = 132 bits (146), Expect = 1e-25 Identities = 168/230 (73%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 |||||||| || | || || ||||||| || || || ||||| || ||||||| Sbjct 854933 CCACCGCGCAGGCGCAGCACCAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAC 854874 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT--- 288363 |||||||| || || || | || || || ||||||||||||||||| || |||| Sbjct 854873 AGCGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTG---ATCTGGC 854817 Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 |||||||| || || |||||||| ||||| ||||| || || || | ||| | || Sbjct 854816 GGGATTCCCTCCTTGTCCTGGATCTTCGCCTTCACATTCTCGATCGTATCCGAGGGCTCG 854757 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || || || ||||| || || || || |||||||| |||||||| Sbjct 854756 ACCTCAAGGGTAATGGTCTTACCCGTGAGGGTTTTGACGAAGATCTGCAT 854707 Score = 132 bits (146), Expect = 1e-25 Identities = 168/230 (73%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||||| || || ||||||| || ||| || || || || ||||||| | Sbjct 1949080 CCACCACGGAGTCGCAGCACCAGATGAAGGGTCGATTCCTTCTGAATGTTGTAGTCGGAG 1949139 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| || || || | || || || ||||||||||||||||| || ||||||| Sbjct 1949140 AGAGTGCGACCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTG---ATCTGGG 1949196 Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 || ||||| || |||||||| || || ||||| || || || | || | || Sbjct 1949197 GGAATGCCTTCCTTGTCCTGGATCTTTGCCTTCACATTCTCGATCGTGTCCGAAGGCTCG 1949256 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || ||||| ||||| ||||| || || || ||||| |||||||| Sbjct 1949257 ACCTCAAGTGTGATGGTCTTGCCGGTGAGTGTTTTCACGAAAATCTGCAT 1949306 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179611732268994