Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20quadriannulatus_20[genbank_20GCA_5F000349065.1_202013- 03-28] 2,823 sequences; 283,828,998 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq2120 98.7 1e-15 seq2347 91.5 2e-13 seq224 91.5 2e-13 seq2514 89.7 6e-13 seq2269 87.8 2e-12 seq2103 86.0 7e-12 seq335 86.0 7e-12 >seq2120 Length=27602 Score = 98.7 bits (108), Expect = 1e-15 Identities = 72/84 (86%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 56995 ATGAAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACA 57054 || || |||||||||| || | | |||||||||| ||||||||||||||||||||| | Sbjct 26168 ATAAACAATTTTCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGA 26227 Query 57055 TACTCACCACTATACTACCGAGGA 57078 |||| |||||||||||| |||||| Sbjct 26228 TACTGACCACTATACTATCGAGGA 26251 Score = 89.7 bits (98), Expect = 6e-13 Identities = 70/83 (84%), Gaps = 3/83 (4%) Strand=Plus/Plus Query 57000 AAATTTTCTCCTCGGCAA---GAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATA 57056 ||| ||||||||| | | | |||||||||| ||||||||||||||||||||| ||| Sbjct 24860 AAAATTTCTCCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATA 24919 Query 57057 CTCACCACTATACTACCGAGGAT 57079 || |||||||||||| ||||||| Sbjct 24920 CTGACCACTATACTATCGAGGAT 24942 >seq2347 Length=1466857 Score = 91.5 bits (100), Expect = 2e-13 Identities = 79/96 (82%), Gaps = 3/96 (3%) Strand=Plus/Plus Query 56993 TTATGAAAAATTTTC-TCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGG 57051 |||| |||| | || ||| || | | |||||||||| ||||||||||||||||||||| Sbjct 721014 TTATAAAAATCTCTCCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGG 721073 Query 57052 ACATACTCACCACTATACTACCGAGGA--TTGAATA 57085 ||||| |||||||||||| |||||| ||||||| Sbjct 721074 GGATACTGACCACTATACTATCGAGGACGTTGAATA 721109 Score = 91.5 bits (100), Expect = 2e-13 Identities = 78/94 (83%), Gaps = 3/94 (3%) Strand=Plus/Plus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| || | | |||||||||| ||||||||||||||||||||| ||||| |||||| Sbjct 721954 TCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACT 722013 Query 57066 ATACTACCGAGGA--TTGAATATATAACTTGAAT 57097 |||||| |||||| |||| ||| ||| || ||| Sbjct 722014 ATACTATCGAGGAAGTTGATTAT-TAAGTTAAAT 722046 Score = 89.7 bits (98), Expect = 6e-13 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 57005 TTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCAC 57064 |||||| || | | |||||||||| ||||||||||||||||||||| ||||| ||||| Sbjct 723562 TTCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCAC 723621 Query 57065 TATACTACCGAGGA 57078 ||||||| |||||| Sbjct 723622 TATACTATCGAGGA 723635 Score = 86.0 bits (94), Expect = 7e-12 Identities = 66/77 (86%), Gaps = 1/77 (1%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 724391 CTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTA 724450 Query 57067 TACTACCGAGG-ATTGA 57082 ||||| ||||| ||||| Sbjct 724451 TACTATCGAGGAATTGA 724467 >seq224 Length=3387546 Score = 91.5 bits (100), Expect = 2e-13 Identities = 73/86 (85%), Gaps = 4/86 (5%) Strand=Plus/Minus Query 56998 AAAAAT-TTTCTCCTCGGCAA---GAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGAC 57053 |||||| ||||||||| | | | |||||||||| ||||||||||||||||||||| Sbjct 2720292 AAAAATATTTCTCCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGG 2720233 Query 57054 ATACTCACCACTATACTACCGAGGAT 57079 ||||| |||||||||||| ||||||| Sbjct 2720232 ATACTGACCACTATACTATCGAGGAT 2720207 Score = 89.7 bits (98), Expect = 6e-13 Identities = 71/85 (84%), Gaps = 3/85 (4%) Strand=Plus/Plus Query 56998 AAAAATTTTCTCCTCGGCAA---GAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACA 57054 |||| ||||||||| | | | |||||||||| ||||||||||||||||||||| | Sbjct 2719983 AAAACATTTCTCCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGA 2720042 Query 57055 TACTCACCACTATACTACCGAGGAT 57079 |||| |||||||||||| ||||||| Sbjct 2720043 TACTGACCACTATACTATCGAGGAT 2720067 Score = 87.8 bits (96), Expect = 2e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| || | | |||||||||| ||||||||||||||||||||| ||||| |||||| Sbjct 169761 TCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACT 169702 Query 57066 ATACTACCGAGGA 57078 |||||| |||||| Sbjct 169701 ATACTATCGAGGA 169689 Score = 87.8 bits (96), Expect = 2e-12 Identities = 67/78 (86%), Gaps = 1/78 (1%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 2720730 CTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTA 2720671 Query 57067 TACTACCGAGGA-TTGAA 57083 ||||| |||||| ||||| Sbjct 2720670 TACTATCGAGGACTTGAA 2720653 >seq2514 Length=1352126 Score = 89.7 bits (98), Expect = 6e-13 Identities = 70/83 (84%), Gaps = 2/83 (2%) Strand=Plus/Plus Query 56998 AAAAATTT--TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACAT 57055 |||| ||| ||||| || | | |||||||||| ||||||||||||||||||||| || Sbjct 1083489 AAAAGTTTACTCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGAT 1083548 Query 57056 ACTCACCACTATACTACCGAGGA 57078 ||| |||||||||||| |||||| Sbjct 1083549 ACTGACCACTATACTATCGAGGA 1083571 Score = 89.7 bits (98), Expect = 6e-13 Identities = 70/83 (84%), Gaps = 2/83 (2%) Strand=Plus/Plus Query 56998 AAAAATTT--TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACAT 57055 |||| ||| ||||| || | | |||||||||| ||||||||||||||||||||| || Sbjct 1085520 AAAAGTTTACTCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGAT 1085579 Query 57056 ACTCACCACTATACTACCGAGGA 57078 ||| |||||||||||| |||||| Sbjct 1085580 ACTGACCACTATACTATCGAGGA 1085602 Score = 87.8 bits (96), Expect = 2e-12 Identities = 65/76 (86%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 57003 TTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACC 57062 ||| |||| || | | |||||||||| ||||||||||||||||||||| ||||| ||| Sbjct 810840 TTTCCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACC 810781 Query 57063 ACTATACTACCGAGGA 57078 ||||||||| |||||| Sbjct 810780 ACTATACTATCGAGGA 810765 >seq2269 Length=4330644 Score = 87.8 bits (96), Expect = 2e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| || | | |||||||||| ||||||||||||||||||||| ||||| |||||| Sbjct 3492085 TCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACT 3492026 Query 57066 ATACTACCGAGGA 57078 |||||| |||||| Sbjct 3492025 ATACTATCGAGGA 3492013 Score = 86.0 bits (94), Expect = 7e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 649924 CTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTA 649983 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 649984 TACTATCGAGGA 649995 >seq2103 Length=1908487 Score = 86.0 bits (94), Expect = 7e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 126996 CTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTA 127055 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 127056 TACTATCGAGGA 127067 >seq335 Length=3842677 Score = 86.0 bits (94), Expect = 7e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 1507406 CTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTA 1507347 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 1507346 TACTATCGAGGA 1507335 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543193631378320