Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20quadriannulatus_20[genbank_20GCA_5F000349065.1_202013- 03-28] 2,823 sequences; 283,828,998 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq2381 419 2e-112 seq2001 123 2e-23 seq113 87.8 2e-12 >seq2381 Length=1337761 Score = 419 bits (464), Expect = 2e-112 Identities = 999/1500 (67%), Gaps = 20/1500 (1%) Strand=Plus/Plus Query 153027 TGGTTGACCACTTGAAACTCGCCCGCCAACACTCGTCTCAAATATACATTGCTAGTGAAA 153086 ||||| ||||| || |||||||||| || ||| || || || || || ||| | Sbjct 918838 TGGTTCACCACCTGGAACTCGCCCGACAGCACGCGCCTATTGTAAACGTTCGACGTGTAC 918897 Query 153087 GGTTCAAAGGATTCGTTATTGCCTAGTATTTGAGCCGTGGTTGCGGTCGGCATGTACGCC 153146 || || || ||||| || ||||| || ||||| ||||||| || |||||||| ||| Sbjct 918898 GGCTCGAACGATTCATTGTTGCCGAGAATTTGTGCCGTGGAAGCCGTCGGCATCGGGGCC 918957 Query 153147 ACCAACAAAGAATTCCGCAAGCCGTGCGCTCGAATGTCGTCCTTCAACGCCTGCCAATCC 153206 | || || ||||| || | ||||| || | ||||||||| | ||| | | Sbjct 918958 AACAGCAGCGAATTGCGAATACCGTGTTTGGCGATCTTTTCCTTCAACTCGGCCCAGTTC 919017 Query 153207 CACAGCGCCGACGGTGTCGCGTTCCACATGTCGTACTGTAACACTCCTCGACTGGCGGGA 153266 ||||| ||| |||| | ||||||||| |||||||| || | || || | ||| Sbjct 919018 CACAGATCCGTCGGTTCCTTGTTCCACATCTCGTACTGCAAGATGCCCTTGCTCACCGGA 919077 Query 153267 CTGCCGGCAAACGTACTGTAGCTGCCGTCGCGTTGGGCCAGTTCGCAGCTAGCCTCGAGC 153326 ||||| | |||| ||| || || || ||||| || ||||| || || ||| Sbjct 919078 CTGCCCTCGTACGTCTCGTACGGACCATCTCGAGCGGCCAACTCACAGCTCGCTTCCAGC 919137 Query 153327 GCGCCATAGTATATGGTTTCGGCGATTTGTTTATTGAGAACGGCCGCTTCTTCGCTCTCG 153386 ||||| ||||| || |||||| ||||| | ||| || || |||||||| ||| Sbjct 919138 GCGCCGTAGTAGATAGTTTCGAATATTTGCTGATTTAGCTTTTGAGCCTCTTCGCTTTCG 919197 Query 153387 TACGGCATGCGCAGCAGCACAAAGGCGTCGGCCAGACCCTGGATACCGACGCCGATGGGT 153446 ||||| ||||| ||| | || || ||||||| || || | |||| ||||| || Sbjct 919198 TACGGATAGCGCATCAGGATGAACGCATCGGCCATGCCTTGCACGCCGATCCCGATCGGC 919257 Query 153447 CGATGCTTCTCGTTGCTGCGCCTCGCGCTCGCTATGGGATAGTGATTGCGATCGATAATT 153506 | || | ||| |||| | || || | |||||||| |||| ||| || ||| Sbjct 919258 CTGTGGCGCATATTGGAGCGCTTAGCCTCCGGCACGGGATAGTAATTGACATCAATGATT 919317 Query 153507 TTGTTGAGGTTGCGCACCACCACTTTAGTTATCGCCTTAAGTTTCTCGAAATCATAGGTC 153566 ||||| || |||||| ||| |||| | |||| || || | || ||||| || Sbjct 919318 TTGTTCAGATTGCGCGTCACTGTCTTAGCGACTTCCTTCAGCTTTGCAAAGTCATACGT- 919376 Query 153567 ATTTCGTCGACGCGTACGCATCGATTCACGGCAATAGACGCCAGATTACAGACGGCCGTC 153626 || ||| ||| | |||| ||| || || |||||||| || || || | Sbjct 919377 --TTTGTCTTGCTTTACAAACATGTTCAAGGCGATCGAGGCCAGATTGCATACCGCTACC 919434 Query 153627 TCTTCGG-CGTCGCTGTACTGCACGATCTCGGCGCAGAGGTTGCTGCATTTTATGACGCC 153685 || || || || ||||| ||| ||||| | ||| | |||| ||||| ||| ||| Sbjct 919435 TCATCCTTCGACGA-GTACTCCACAATCTCAGTGCACAAGTTGGAACATTTGATGGTGCC 919493 Query 153686 CAAATTTTGCTGATTGCTTTTGCGATTGCACGCGTCTTTGAAGAGCATGTACGGTCCGCC 153745 | ||| ||||| || ||||| |||||||| || || ||| | ||||||||||| |||| Sbjct 919494 GATATTCTGCTGGTTACTTTTACGATTGCAAGCATCCTTGTACAGCATGTACGGCACGCC 919553 Query 153746 GGTCTCGACTTGCGTTTCGACGAT---AAACCTATGCAGGTCCTGCGCTCGCACCCGCTG 153802 ||| || ||||||| ||||| || ||||| ||| |||||||| |||| | | Sbjct 919554 GGTTTCCACTTGCGATTCGATTATCGCAAACC---ACAGATCCTGCGCCTTCACCTGTCG 919610 Query 153803 CCGATAGCGGCCCTCGCTCTCGTATCGCTCGTACAGTCGCTCAAACTCGTCGCCGTAGCA 153862 | | |||| ||||| ||||||| | | |||||| ||| ||||| ||||| || Sbjct 919611 CATAAAGCGACCCTCTTTCTCGTACCCCGTGTACAGCTTCTCGAACTCTTCGCCCCAGGT 919670 Query 153863 GTCGGCGAGGCCGGGACACTGATGCGGACACATCAGCGACCACATATCGTCGGCGTTGAC 153922 ||| | || |||||||| | ||||| |||||||| |||||| |||| || | || Sbjct 919671 GTCCGATAGCCCGGGACAATCGTGCGGGCACATCAGGCTCCACATTTCGTTCGCCTCCAC 919730 Query 153923 GCGTCGCATGAACAGATCCGGCACCCAGAGCGCGTACATGAGGTCGCGCGCCTTGCAATC 153982 || |||||||||| ||||| | ||| || ||||| | | ||| || || | || Sbjct 919731 ACGCTGCATGAACAGGTCCGGTATCCACAGTGCGTAAAACATGTCCCGTGCGCGGACCTC 919790 Query 153983 CTCCGCGCCCATGTTGCGTTTCAGATTGAG-CACGCTATAGATGTCGGCGTGCCAGGGTT 154041 |||| ||| |||| ||||||| ||| || | | | || ||| | ||||| || | Sbjct 919791 CTCCTTGCCGGTGTTTTTCTTCAGATCGAGAAACTCGA-ATATATCGCCATGCCACGGCT 919849 Query 154042 CAATGTAGACGGCCAGGGCACCTTTACGC---TTTCCGCCCTGATCGACGTGGCGCACCA 154098 | | |||| ||| | || || ||| || |||||||||||||||| || || Sbjct 919850 CGAGATAGATGGCGAATGCTCCAGGCCGCTTGTTACCGCCCTGATCGACGTACCGTGCCG 919909 Query 154099 TATTGTTGAAGACGCGCACCATGGGTTCCAGGCCGCTTGCGGTGCCGTTGGT--CGAATT 154156 |||||||| ||||||||| ||| || |||| ||| ||| | ||||| || || | Sbjct 919910 TATTGTTGTAGACGCGCAACATCGGCACCAGACCGTTTGAAATCCCGTTCGTACCGGA-- 919967 Query 154157 GATCTTGCTGCCGCGGGCGCGCACTTGATGCACGTTAACGCCAATGCCGCCGCCGTACTT 154216 ||| | | || ||||| | |||||||| | || ||||| ||| | |||| Sbjct 919968 GATGTACGTTCCCTTCGCGCGAATACAGTGCACGTTCAGTCCGATGCCACCGGCCGACTT 920027 Query 154217 TGATATGGCAGCGCAGTCGCCCAGCGTCCTGTAGATGCCGTCGATGCTATCGTCGCGGAC 154276 ||| || || || | |||||| ||||||||| || |||||||| ||| | Sbjct 920028 TGAAATTAGGGCACACTGCTTCAGCGTGTCGTAGATGCCCTCAATGCTATCTTCGGACAT 920087 Query 154277 GCCGAGCAAGAAACACGAACACATTTGCGGAATGCGCGTTCCCGCCGAAAAGAGGGTGGG 154336 | | || ||| || || | | || || |||| |||||| ||| | || || Sbjct 920088 GGTCAACAGGAAGCAGGACGAAAGCTGGGGGCGCTGCGTAGCCGCCGCAAACATAGTTGG 920147 Query 154337 ACTCGCGTGCGTAAACAGTTTTTGGCTCATCATGCGGTACGTTTCGATGGCGTCTTCGAT 154396 ||||| ||||| | | || || ||| || ||||| || | ||||| Sbjct 920148 CGAGGCGTGGGTAAAGTAACGCTCGGACAGCAGATTGTAGGTCTCGATCGCTGCATCGAT 920207 Query 154397 ATCATCGCCGTGAATGCCGAGCGCGACGCGCATGAGCATGTGCTGCGGACGTTCGGCGAC 154456 || ||||| || ||||| | || |||||||| ||||||||||| || || ||| ||| Sbjct 920208 GTCCTCGCCATGGATGCCAATAGCAACGCGCATCAGCATGTGCTGGGGGCGCTCGACGAT 920267 Query 154457 TCTATTGTCAATCTTCAAGAGATATCCATTTTCGAGGGTTTTGTAACCGAAATACTTGTA 154516 | | | ||||||| | ||| ||| | |||||| | |||||||| ||||| Sbjct 920268 TTTTCCCTTGATCTTCAGCAAGTATGATCGTTCCAAGGTTTTAAAGCCGAAATAGTTGTA 920327 >seq2001 Length=1904535 Score = 123 bits (136), Expect = 2e-23 Identities = 302/444 (68%), Gaps = 14/444 (3%) Strand=Plus/Plus Query 52305 CTGCTGAATGCGTTCGAGCACG-TGCCGTGCGTTCGCAAAAAGGCTCAGTGGGCAATGAA 52363 ||| | ||||| |||| ||| |||||||||| ||||| | ||||| |||| Sbjct 1560093 CTGTTCAATGCCATCGAA-ACGCTGCCGTGCGTGAAGCGGAAGGCGGACTGGGCGCTGAA 1560151 Query 52364 GTGGATCGAGAGCGACACCGCCACGCTGGCCGAGCGCATGGTGGCCTTCGCCATAGTCGA 52423 |||||| |||| | | |||| | | |||||| | ||||| ||||| || || Sbjct 1560152 CTGGATCTCGAGCAAGAAGGCCAACTTTGGCGAGCGGGTCGTGGCATTCGCTGCGGTTGA 1560211 Query 52424 GGGCGTGtttttttCCGGCAGCTTTGCCGCCATCTTTTACATTAA--AACGAAAGGCATA 52481 ||| | || || ||||||||| ||||| ||||| | | || |||| ||| | Sbjct 1560212 GGGTATCTTCTTCAGCGGCAGCTTCGCCGCGATCTTCTGGCTGAAGAAACGT--GGCCTG 1560269 Query 52482 ATGCCCGGCCTGACGTTCAGCAACGAGTTGATATCGCGCGACGAAGGACTGCACACGGAC 52541 ||||| || || || ||| |||||| |||| |||||||||||||| |||||| ||| Sbjct 1560270 ATGCCAGGACTCACCTTCTCGAACGAGCTGATCTCGCGCGACGAAGGGCTGCACTGCGAC 1560329 Query 52542 TTTGCGTGCCTCTACTACAAGACGCGCGTGACCGAAAAATTGGATTCGGA-CACGATCCT 52600 ||||| ||||| | |||| | ||| | ||| | || ||| | || | Sbjct 1560330 TTTGCCTGCCTGATGTTCAAGTATCTGGTG-CAGAAGCCGTCGA--AGGAGCGCGTGACG 1560386 Query 52601 GAGCATGTTCAAGGAGGCGGTGGCTATCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGT 52660 ||| || || || ||||| ||||| ||||||| | ||| || |||||||| Sbjct 1560387 GAG-ATCATCCGCGATGCGGTCCTGATCGAGCAGGAGTTCCTGACGAAGGCACTGCCGGT 1560445 Query 52661 CGAGCTGCTGGGCATGAAC-GCGCAGTCCATGTGCGAGTACATCGAGTTTGTGGCGGATC 52719 || |||||||||||||| ||| | |||| ||||||| ||||||||||| |||| Sbjct 1560446 GGATATGCTGGGCATGAACTGCG-ATCTGATGTCGCAGTACATTGAGTTTGTGGCCGATC 1560504 Query 52720 GTCTGTTGGTGCAGCTCGGGCAGC 52743 || || || | |||| |||| || Sbjct 1560505 GTTTGCTGCTCGAGCT-GGGCTGC 1560527 >seq113 Length=3238079 Score = 87.8 bits (96), Expect = 2e-12 Identities = 149/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 138400 CGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAG 138459 |||| || | ||| | | | || ||||| ||||||||||||||| | ||| || Sbjct 1949092 CGCAGCACCAGATGAAGGGTCGATTCCTTCTGAATGTTGTAGTCGGAGAGAGTGCGACCA 1949151 Query 138460 TCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTG 138519 ||||| || || || |||| |||| |||||||| || || || || || ||||| ||| Sbjct 1949152 TCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGAATGCCTTCCTTG 1949211 Query 138520 TCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGC 138579 || ||| ||| || | | || | ||||| | | ||| ||||| | || | Sbjct 1949212 TCCTGGATCTTTGCCTTCACATTCTCGATCGTGTCCGAAGGCTCGACCTCAAGTGTGATG 1949271 Query 138580 GTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 || || || || || ||||| || |||||||||||| Sbjct 1949272 GTCTTGCCGGTGAGTGTTTTCACGAAAATCTGCATG 1949307 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496244888140560