Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20quadriannulatus_20[genbank_20GCA_5F000349065.1_202013- 03-28] 2,823 sequences; 283,828,998 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq2381 185 8e-42 seq113 136 4e-27 seq224 116 4e-21 >seq2381 Length=1337761 Score = 185 bits (204), Expect = 8e-42 Identities = 933/1455 (64%), Gaps = 59/1455 (4%) Strand=Plus/Plus Query 146056 AGATACTGGTTGACCACCTGAAACTCGCCGGCGAGAACGCGCCTCAGATACACGTTGCTG 146115 |||| ||||| |||||||| |||||||| | || |||||||| || ||||| Sbjct 918832 AGATGATGGTTCACCACCTGGAACTCGCCCGACAGCACGCGCCTATTGTAAACGTTCGAC 918891 Query 146116 GTGAACGGCTCGAACGACTCGTTGTTACCGAGTATCTGCGCCGTCGTAGCGGTAGGCATG 146175 ||| ||||||||||||| || ||||| ||||| || || ||||| | ||| || ||||| Sbjct 918892 GTGTACGGCTCGAACGATTCATTGTTGCCGAGAATTTGTGCCGTGGAAGCCGTCGGCATC 918951 Query 146176 TACGCCACCAGCAAAGAGTTTCTCACGCCGTGTCTTTGAATCTTTTCCCGTAGTTTGGAC 146235 |||| ||||| || || | | |||||| | ||||||||| | | || | Sbjct 918952 GGGGCCAACAGCAGCGAATTGCGAATACCGTGTTTGGCGATCTTTTCCTTCAACTCGGCC 919011 Query 146236 CAATTCCACAAATGATCCGTGGGATAGATATTGTAGTTGTCGTAATGCATAGTGCCGCGG 146295 || ||||||| ||||||| || | | || | | ||||| |||| |||| | Sbjct 919012 CAGTTCCACA---GATCCGTCGGTTCCTTGTTCCACATCTCGTACTGCAAGATGCCCTTG 919068 Query 146296 AACAGGGGGCTATTCTCGTACGATTCATAAGGACC--GTCGATCTTGGCCAGTTCGCAGC 146353 || || || |||||||| || || ||||| |||| | ||||| || |||| Sbjct 919069 CTCACCGGACTGCCCTCGTACGTCTCGTACGGACCATCTCGAGC--GGCCAACTCACAGC 919126 Query 146354 TAGCTTCCAGAGCCGAAAAGTATATGGTCTCCGCGATCATGTAGTTGA---CGCTCCTG- 146409 | |||||||| || |||| || || | ||| || | | ||| ||| || Sbjct 919127 TCGCTTCCAGCGCGCCGTAGTAGATAGTTT---CGAATAT-TTGCTGATTTAGCTTTTGA 919182 Query 146410 GCCTCCTCGCTGTCGTAGGGGATATCG-AGAAGCACAAAGGCGTCGGCGAGACCCTGTAT 146468 ||||| ||||| ||||| ||||| || | || | || || ||||| | || || | Sbjct 919183 GCCTCTTCGCTTTCGTA-CGGATAGCGCATCAGGATGAACGCATCGGCCATGCCTTGCAC 919241 Query 146469 CCCGACACCAACGGGGCGGTGTTTCTTGTTACTGTTCGCAGCGCCCGCAGTGGGATAGTG 146528 |||| || | || | ||| | | || | | ||| ||| |||||||| Sbjct 919242 GCCGATCCCGATCGGCCTGTGGCGCATATTGGAGCGCTTAGCCTCCGGCACGGGATAGTA 919301 Query 146529 GTTGCTGTCGATGATCTTGTTGAGATTACGCACGACAATTTTCGTCAAACGATTCAGCAG 146588 ||| || ||||| ||||| ||||| ||| || | || | | |||||| Sbjct 919302 ATTGACATCAATGATTTTGTTCAGATTGCGCGTCACTGTCTTAGCGACTTCCTTCAGCTT 919361 Query 146589 GACATAGTCAAATGTTTTAGTTTTAACGTTGACGCACTTGTTGACGGCGATAGAGGCCAA 146648 || ||||| | ||||| || || || || || |||| | |||||| ||||||| Sbjct 919362 TGCAAAGTCATACGTTTT-GTCTT--GCTTTACAAACATGTTCAAGGCGATCGAGGCCAG 919418 Query 146649 GTTACATACGGCAGTCTCGTCCTT-GTCGCAATACTGCACAATCTCGGCGCAGAGGTTGC 146707 || ||||| || ||| ||||| | || | |||| ||||||||| | ||| | |||| Sbjct 919419 ATTGCATACCGCTACCTCATCCTTCGACG-AGTACTCCACAATCTCAGTGCACAAGTTGG 919477 Query 146708 TGCACTTGATGATGCCCAAAtttttttGGTTACTAAACTTGTTGCAGGGGTCCTTGTAGA 146767 || |||||| |||| | ||| | |||||||| ||||| | |||||||| | Sbjct 919478 AACATTTGATGGTGCCGATATTCTGCTGGTTACTTTTACGATTGCAAGCATCCTTGTACA 919537 Query 146768 GCATGTACGGTCCCCCGGTTTCGACATTGGTCTCGACGAT--GAATCTAAACAAATCTCT 146825 |||||||||| | |||||||| || | | |||| || || | ||| ||| || Sbjct 919538 GCATGTACGGCACGCCGGTTTCCACTTGCGATTCGATTATCGCAAAC--CACAGATC-CT 919594 Query 146826 G-GCCTTTACTTGTCTTTCGTACAG-TTTATTCTTT-TCGTATTTCTCGTACAATATTTC 146882 | ||||| || |||| | || || ||||| ||||| | ||||| | || Sbjct 919595 GCGCCTTCACCTGTC--GCATAAAGCGACCCTCTTTCTCGTACCCCGTGTACAGCTTCTC 919652 Query 146883 AAAACTAGAACCGTACTCGTCGAGGAGGCCGGGATACTTTTTGGGACAGAACAGCGACCA 146942 || || | ||| || |||||| | | | || || | ||| ||| Sbjct 919653 GAACTCTTCGCCCCAGGTGTCCGATAGCCCGGGACAATCGTGCGGGCACATCAGGCTCCA 919712 Query 146943 TTCTTTATTCTCCTTCACGCGTTCCATAAACAAATCGGGAATCCAAAGGCCCAGCATCAA 147002 || ||| ||| ||| || | ||| |||| || || ||||| || | | || Sbjct 919713 CATTTCGTTCGCCTCCACACGCTGCATGAACAGGTCCGGTATCCACAGTGCGTAAAACAT 919772 Query 147003 GTCGCGAGCCTTGGCGTCCTCGGAGCCCATGTTGCGTCTCAAGTTGAGGACATCGTAAAT 147062 ||| || || | | ||||| ||| |||| ||| | ||| | ||| | || Sbjct 919773 GTCCCGTGCGCGGACCTCCTCCTTGCCGGTGTTTTTCTTCAGATCGAGAAACTCGAATAT 919832 Query 147063 TTCCGGATGCCAAGGCTCCACGTATGCGGCGAGTGCGCCTTTTCGC---TTACCGCCCTG 147119 || |||||| ||||| | || ||||| ||| || ||| ||||||||||| Sbjct 919833 ATCGCCATGCCACGGCTCGAGATAGATGGCGAATGCTCCAGGCCGCTTGTTACCGCCCTG 919892 Query 147120 ATCGACGTGGCGCACCATGTTATTGAAGACTCGTAACATGGACACGAGGCCGCCGGA--- 147176 |||||||| || || | || ||| |||| || ||||| | ||| || ||| || Sbjct 919893 ATCGACGTACCGTGCCGTATTGTTGTAGACGCGCAACATCGGCACCAGACCGTTTGAAAT 919952 Query 147177 ---TTTTGTGGTGCCGTTGTA------TTGAGCGCTGACGCTTTGCACGCTCAGCCCGAG 147227 || || | | |||| | |||| | | |||||| |||| |||| Sbjct 919953 CCCGTTCGTACCGGAGATGTACGTTCCCTTCGCGCGAATACAGTGCACGTTCAGTCCGAT 920012 Query 147228 ACCTCCGCCCAGATTCGAAATCAAAGCGGACTCGTGCAAGGTCTTGTAGATGCCGTCGAT 147287 || ||| || || ||||| | || ||| | || || | ||||||||| || || Sbjct 920013 GCCACCGGCCGACTTTGAAATTAGGGCACACTGCTTCAGCGTGTCGTAGATGCCCTCAAT 920072 Query 147288 GCTGTCTTCCTTGATGCATTGCAGGAAACACGAACACATTTGGGGACGACACGTGCCCGC 147347 ||| ||||| ||| |||||| || || | | ||||| || ||| |||| Sbjct 920073 GCTATCTTCGGACATGGTCAACAGGAAGCAGGACGAAAGCTGGGGGCGCTGCGTAGCCGC 920132 Query 147348 CGCAAACAGCGTGGGGCTGGCGTGCGTGAACGT---GCCCAGACTCATCA-ATTGATACG 147403 |||||||| || || |||||| || || || || | || || || |||| || | Sbjct 920133 CGCAAACATAGTTGGCGAGGCGTGGGT-AAAGTAACGCTCGGA--CAGCAGATTG-TAGG 920188 Query 147404 TTTCAATGGCGCT-CAT-AACGTCATCGCCGTGAATGGCCAGGGCGACGCGCATGAGCAT 147461 | || || |||| ||| | ||| ||||| || ||| | | || |||||||| ||||| Sbjct 920189 TCTCGAT--CGCTGCATCGATGTCCTCGCCATGGATGCCAATAGCAACGCGCATCAGCAT 920246 Query 147462 GTGCTGGGGTCGTTC 147476 ||||||||| || || Sbjct 920247 GTGCTGGGGGCGCTC 920261 >seq113 Length=3238079 Score = 136 bits (150), Expect = 4e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | ||||| ||||| ||| | || || || || ||||| ||||| ||| Sbjct 1949080 CCACCACGGAGTCGCAGCACCAGATGAAGGGTCGATTCCTTCTGAATGTTGTAGTCGGAG 1949139 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | |||||| ||| || ||||| || || ||| |||||| ||||||||||| || || Sbjct 1949140 AGAGTGCGACCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGA 1949199 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 ||||| ||||||||| ||| || ||| | | |||| ||||||| | |||||| Sbjct 1949200 ATGCCTTCCTTGTCCTGGATCTTTGCCTTCACATTCTCGATCGTGTCCGAAGGCTCGACC 1949259 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 || | || | || |||||||| || ||||| || |||||||||||| Sbjct 1949260 TCAAGTGTGATGGTCTTGCCGGTGAGTGTTTTCACGAAAATCTGCATG 1949307 Score = 127 bits (140), Expect = 2e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 126884 GCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCG 126943 || |||||||| | |||| ||||| ||| | || ||||| || || || ||||| ||| Sbjct 854936 GCACCACCGCGCAGGCGCAGCACCAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCG 854877 Query 126944 CCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGA 127003 || |||||| ||| || ||||| || || ||| |||||| ||||||||||| || Sbjct 854876 GACAGCGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGC 854817 Query 127004 GGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCG 127063 || || |||||||||||| ||| ||| ||| | | |||| || |||| |||| Sbjct 854816 GGGATTCCCTCCTTGTCCTGGATCTTCGCCTTCACATTCTCGATCGTATCCGAGGGCTCG 854757 Query 127064 ACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || || | ||| | || || || || || ||||| || || |||||||| Sbjct 854756 ACCTCAAGGGTAATGGTCTTACCCGTGAGGGTTTTGACGAAGATCTGCAT 854707 >seq224 Length=3387546 Score = 116 bits (128), Expect = 4e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | || | |||| ||| | || ||||| || || || || || || | Sbjct 1793862 CCACCACGCAGACGGAGAACCAGATGAAGGGTGGACTCCTTCTGGATGTTATAGTCCGAC 1793921 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||| ||| || ||||| ||||||||| |||||| ||||||||||| || || Sbjct 1793922 AGGGTGCGGCCATCCTCCAGCTGCTTTCCAGCGAAGATCAGACGCTGCTGATCTGGCGGG 1793981 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 || |||||||||||| ||| ||| ||| | | || | || || | ||||| Sbjct 1793982 ATTCCCTCCTTGTCCTGGATCTTCGCCTTCACATTCTCAATCGTATCGGATGGTTCGACC 1794041 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 |||| ||| | || || |||||||||||||| || ||||||||||| Sbjct 1794042 TCGAGGGTGATGGTCTTTCCGGTCAGAGTTTTCACGAAAATCTGCAT 1794088 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945 |||||| || | || | ||||| ||| | || || || || || || || || || Sbjct 1793633 TCCACCACGCAGACGGAGCACCAGATGAAGAGTGGATTCCTTCTGGATGTTATAGTCCGA 1793692 Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005 || ||||| ||| || ||||| ||||||||| |||||| ||||||||||| || || Sbjct 1793693 CAGGGTGCGGCCATCTTCCAGCTGCTTTCCAGCGAAGATCAGACGCTGCTGATCTGGCGG 1793752 Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGAC 127065 || |||||||||||| ||| || ||||| | || | || |||| ||| || Sbjct 1793753 GATTCCCTCCTTGTCCTGGATCTTTGCCTTGACGTTCTCAATCGTATCCGATGGCTCAAC 1793812 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | || | || || |||||||||||||| || ||||||||||| Sbjct 1793813 CTCCAGAGTGATGGTCTTTCCGGTCAGAGTTTTCACGAAAATCTGCAT 1793860 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475484020765520