Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20quadriannulatus_20[genbank_20GCA_5F000349065.1_202013- 03-28] 2,823 sequences; 283,828,998 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq2381 253 2e-62 seq113 104 2e-17 >seq2381 Length=1337761 Score = 253 bits (280), Expect = 2e-62 Identities = 976/1518 (64%), Gaps = 54/1518 (4%) Strand=Plus/Minus Query 122841 TACAAATATTTTGGATACAAAACGTTAGAAAACGGATATTTGaaaaaaaTCGAGGAAAAG 122900 ||||| ||||| || | ||||| || ||| ||| ||| || ||| ||| ||| Sbjct 920327 TACAACTATTTCGGCTTTAAAACCTTGGAACGATCATACTTGCTGAAGATCAAGGGAAAA 920268 Query 122901 GTCGCCGAACGTATTCAACATATGCTCATGCGCGTCGCTATAGGCGTGCACGGACGCGAC 122960 ||| ||| || || || ||||| |||||||| ||||| ||| | || || ||| Sbjct 920267 ATCGTCGAGCGCCCCCAGCACATGCTGATGCGCGTTGCTATTGGCATCCATGGCGAGGAC 920208 Query 122961 ATCGAAAACGCGACCGAAACTTACGATTTGATGTCTCAAAAATTTTTCACGCACGCGAGT 123020 ||||| |||| ||| || ||| || || |||| | | || || ||||| Sbjct 920207 ATCGATGCAGCGATCGAGACCTACAATCTGCTGTCCGAGCGTTACTTTACCCACGCCTCG 920148 Query 123021 CCCACTTTGTTCGCCGCCGGCACGAAGTTGCCTCAGTTGTCTTCGTGTTTTTTGCTCACC 123080 || ||| |||| || || | ||| || || ||| | || || || || || | ||| Sbjct 920147 CCAACTATGTTTGCGGCGGCTACGCAGCGCCCCCAGCTTTCGTCCTGCTTCCTGTTGACC 920088 Query 123081 TTGCGCGAAGACAGCATCACCGGTATCTATGAAACTTTGCGCGATTGCGCGTTGATTTCC 123140 || |||||| ||||| || ||||| || || || | || || | ||||| Sbjct 920087 ATGTCCGAAGATAGCATTGAGGGCATCTACGACACGCTGAAGCAGTGTGCCCTAATTTCA 920028 Query 123141 AAATTTGGCGGCGGCATAGGCGTGAACGTGCACGACGTAAGAGGCCGC--GGAAGCCGCA 123198 || | | ||| ||||| || ||||||||||| ||| | || |||| || Sbjct 920027 AAGTCGGCCGGTGGCATCGGACTGAACGTGCACT--GTATTCGCGCGAAGGGAACGTACA 919970 Query 123199 TCAGAAGCACCGACGGAATCGCCTCCGGGCTCGAATCCATGCTGCGAGTTTACAATAACG 123258 || | || |||| || | ||| || | | ||| |||| || ||||| || Sbjct 919969 TCTCCGGTACGAACGGGATTTCAAACGGTCTGGTGCCGATGTTGCGCGTCTACAACAATA 919910 Query 123259 CCGTGCGGCACGTCGACCAGGGCGG---CAAACGCAAAGGCGCGATGGCGATCTATCTAG 123315 | | ||| ||||||| |||||||| ||| || || || | || |||||||| | Sbjct 919909 CGGCACGGTACGTCGATCAGGGCGGTAACAAGCGGCCTGGAGCATTCGCCATCTATCTCG 919850 Query 123316 AACCGTGGCACGTTGATGTGTACGATTTTTTAAATTTAAAACGCAACATGGGGGCGGAAG 123375 | |||||||| | ||| | | ||| ||| | || | || |||| || ||| | Sbjct 919849 AGCCGTGGCATGGCGATATATTCGAGTTTCTCGATCTGAAGAAAAACACCGGCAAGGAGG 919790 Query 123376 AAAAGAAAGCCCGCGATTTGTTGTACGCTTTATGGGTACCCGATTTGTTTATGCGACGCG 123435 | || || || |||| ||||| | ||| |||| || |||| |||| || | Sbjct 919789 AGGTCCGCGCACGGGACATGTTTTACGCACTGTGGATACCGGACCTGTTCATGCAGCGTG 919730 Query 123436 TAAAAGACGACGGCGTGTGGTCGCTCATGTGTCCCGATCGGT-GTCCCGGCTTGAGCGAC 123494 | | | ||| ||||| || ||||| |||| || | ||||||| | ||| Sbjct 919729 TGGAGGCGAACGAAATGTGGAGCCTGATGTG-CCCGCACGATTGTCCCGGGCTATCGGAC 919671 Query 123495 GTTTACGGCAATCAGTTTGACGAGTTGTACGCGCAATACGAGCGCGAAGGCAAACAGGTT 123554 | ||| | |||| || || ||||| || |||||| || || | || Sbjct 919670 ACCTGGGGCGAAGAGTTCGAGAAGCTGTACACGGGGTACGAGAAAGAGGGT---CGCTTT 919614 Query 123555 A---GTCAGGTTCCGGCACGTGATTTGTTCAAATTT---ATTATCGAAACACAAGTCGAA 123608 | | ||||| ||| | ||| ||| ||| || |||||| | ||||| ||| Sbjct 919613 ATGCGACAGGTGAAGGCGCAGGATCTGTGG---TTTGCGATAATCGAATCGCAAGTGGAA 919557 Query 123609 ACCGGAACGCCGTACATGCTCTACAAAGACGCCTGCAACAGGAAAACCAATCAGAGCAAC 123668 ||||| |||||||||||| ||||| || || ||||| | |||| || ||| || Sbjct 919556 ACCGGCGTGCCGTACATGCTGTACAAGGATGCTTGCAATCGTAAAAGTAACCAGCAGAAT 919497 Query 123669 TTGGGAACAATAAAATGTAGTAATCTTTGCTCCGAAATTATCGAATACAG--CGATGCCG 123726 | || || || |||||| || | ||| | || ||| | || ||| ||| | | Sbjct 919496 ATCGGCACCATCAAATGTTCCAACTTGTGCACTGAGATTGTGGAGTACTCGTCGAAG--G 919439 Query 123727 ATCAAGTGGCCGTGTGTAATTTGGCTTCGATTTGCGTGAA--TCGTTGCGTCG------A 123778 || | || || || || ||| |||| ||||| | |||| | ||| | | Sbjct 919438 ATGAGGTAGCGGTATGCAATCTGGCCTCGATCGCCTTGAACATGTTTGTAAAGCAAGACA 919379 Query 123779 AAACGGCGCTTTTAATTTCCAAACGCTCAAACGCATAACAAAAACTGTAGTAAAG---AA 123835 ||||| | | | ||| |||| ||| || | | || || ||| | | || Sbjct 919378 AAACG----TATGACTTTGCAAA-GCTGAAGGAAGTCGCTAAGAC---AGTGACGCGCAA 919327 Query 123836 TTTGAACAAAATTATCGATGTTAATTTTTATCCTTTG---GAGG--AAGCGCGTTTGTCT 123890 | |||||||||| || ||||| |||| ||||| || |||| |||||| || Sbjct 919326 TCTGAACAAAATCATTGATGTCAATTACTATCCCGTGCCGGAGGCTAAGCGC-----TCC 919272 Query 123891 AATTTGAAACACAGACCGGTCGGAGTGGGCATTCAAGGGTTGGCCGACGCGTTTGTAATG 123950 ||| || ||||| ||| |||| | ||| | ||||| ||||||| ||||| | || Sbjct 919271 AATATGCGCCACAGGCCGATCGGGATCGGCGTGCAAGGCATGGCCGATGCGTTCATCCTG 919212 Query 123951 CTGCGCATGCCGTACGAAAGCGACGAAGCAAAGTTGCTTAATACGCAAATAGCCGAAACA 124010 ||||| |||||||||||||| || || | ||| ||| ||||||| |||||| Sbjct 919211 ATGCGCTATCCGTACGAAAGCGAAGAGGCTCAAAAGCTAAATCAGCAAATATTCGAAACT 919152 Query 124011 ATTTATTACGGCGCTTTGGAGGCGAGCTGCGAACTTGCGAAAATTCACGGCGCGTACGAA 124070 || || |||||||| |||| |||||||| || | || | || ||||||| Sbjct 919151 ATCTACTACGGCGCGCTGGAAGCGAGCTGTGAGTTGGCCGCTCGAGATGGTCCGTACGAG 919092 Query 124071 AGTTACGCGGGCAGCCCGGCGAGCCGAGGTATTTTGCAGTACGACATGTGGAATGCTACA 124130 | |||| |||||| |||| |||| || || ||||||||||| |||||||| | Sbjct 919091 ACGTACGAGGGCAGTCCGGTGAGCAAGGGCATCTTGCAGTACGAGATGTGGAACAAGGAA 919032 Query 124131 CCGACAAATTTGTGGGACTGGAGCGTTTTAAAACAACGCATATCGACGCACGGTTTGCGT 124190 ||||| || ||||| ||||| || || || || || | | |||||| | || Sbjct 919031 CCGACGGATCTGTGGAACTGGGCCGAGTTGAAGGAAAAGATCGCCAAACACGGTATTCGC 918972 Query 124191 AACTCGCTGTTGGTGGCGTACATGCCGACGGCAACCACTGCTCAAATTTTAGGAAACAAC 124250 || |||||| || |||| ||||||||||| |||| || |||||| | || ||||| Sbjct 918971 AATTCGCTGCTGTTGGCCCCGATGCCGACGGCTTCCACGGCACAAATTCTCGGCAACAAT 918912 Query 124251 GAATCCTTCGAGCCGTTCACTAACAATTTGTACGTGCGACGAGTGTTAGCCGGCGATTTT 124310 ||||| |||||||||| ||| || | ||| | || ||| | | ||||| || Sbjct 918911 GAATCGTTCGAGCCGTACACGTCGAACGTTTACAATAGGCGCGTGCTGTCGGGCGAGTTC 918852 Query 124311 CAAGTGATAAATCATCAT 124328 || ||| | || |||||| Sbjct 918851 CAGGTGGTGAACCATCAT 918834 >seq113 Length=3238079 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 || || ||||| | || ||| ||||| || || |||||||| || || || || ||| | Sbjct 1949080 CCACCACGGAGTCGCAGCACCAGATGAAGGGTCGATTCCTTCTGAATGTTGTAGTCGGAG 1949139 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | || | ||| |||| || || || ||| | |||| || ||||| || || ||| Sbjct 1949140 AGAGTGCGACCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGA 1949199 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACT 45293 |||||||| || || || || ||| || | || | ||||| |||| |||||| Sbjct 1949200 ATGCCTTCCTTGTCCTGGATCTTTGCCTTCACATTCTCGATCGTGTCCGAAGGCTCGACC 1949259 Query 45294 TCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || || | || |||||||| || ||||| || ||||| ||||| Sbjct 1949260 TCAAGTGTGATGGTCTTGCCGGTGAGTGTTTTCACGAAAATCTGCAT 1949306 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451987249937080