Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20quadriannulatus_20[genbank_20GCA_5F000349065.1_202013- 03-28] 2,823 sequences; 283,828,998 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq2381 206 4e-48 seq2001 158 2e-33 >seq2381 Length=1337761 Score = 206 bits (228), Expect = 4e-48 Identities = 412/608 (68%), Gaps = 2/608 (0%) Strand=Plus/Plus Query 203833 CTTCGTCTTGTCCACCGTGAACTGAATGGCGTTCACGGCAGGCCTGCTTCTCAGATAGTA 203892 |||||||||||||||||| ||||| || || || ||||| ||| || | | ||||||||| Sbjct 918486 CTTCGTCTTGTCCACCGTAAACTGGATCGCATTTACGGCTGGCTTGGTACGCAGATAGTA 918545 Query 203893 CATGCCGGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCAC 203952 |||||| || || | ||| ||| ||| ||||| | || || || | ||| |||| Sbjct 918546 CATGCCAGTTTTCAAACCCATCTTCCAGCCGTAGAAATGGATCGACGTCAGCTTGCCATA 918605 Query 203953 GTTGGGGTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGAT 204011 ||| || || || | ||||||||| | || || || ||||| ||| || || |||| Sbjct 918606 GTTTGGCTCCGCGACGTGAATGTTGAACGATTGCGACTGATCGAT-AAACGCACCACGAT 918664 Query 204012 CTGCGGCCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACACGTCTC 204071 |||||||||| ||||| || ||| ||| |||||||| ||||| ||| ||| ||| | Sbjct 918665 CTGCGGCCATTTTGATGCACGTTTTCACCGAGATCTCCCATACCGTTTTGTACAGGTCGC 918724 Query 204072 TGGTGTGTTGAGGCACATCTTCCCACGTCCTGATCGAGCCGTTGTCGGCCATCAGTCTCA 204131 | | || || | | | | | | |||||| || |||| || || | | Sbjct 918725 GAATTTCCTGCGGTATAGCCGCAATCTTTTGGATCGATCCATTGTTGGACAGAATTTCGT 918784 Query 204132 TCCTCGTCTCCTCCCCCCACATGCCCAACCTGATCAGCTCCCGCACCAGGTGGGGGTTGA 204191 || || | || |||||| |||| || ||| ||| ||| || || |||| | Sbjct 918785 TCTTCATGTCGAGATCCCACAGACCCATGTTGGTCAAATCCTGCAGAAGATGATGGTTCA 918844 Query 204192 TGATCTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGA 204251 | ||| || || || |||||||| | | || | | ||| ||| | || |||| Sbjct 918845 CCACCTGGAACTCGCCCGACAGCACGCGCCTATTGTAAACGTTCGACGTGTACGGCTCGA 918904 Query 204252 ACGCCTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCA 204311 ||| || |||||||||| ||| || || ||| ||||| ||||| || |||| |||| Sbjct 918905 ACGATTCATTGTTGCCGAGAATTTGTGCCGTGGAAGCCGTCGGCATCGGGGCCAACAGCA 918964 Query 204312 GGGAGTTGCGCACACCGTATTTTTGGACCCTGCGCTTCAGAGAGGTCCAGTCGTGCATCG 204371 | || ||||| | ||||| ||| || | | ||||| || ||||| || Sbjct 918965 GCGAATTGCGAATACCGTGTTTGGCGATCTTTTCCTTCAACTCGGCCCAGTTCCACAGAT 919024 Query 204372 CACTGGGTTTCACGCCCCACATGTCGAACTGAAAGATGCCTTGACTGACTGGGCTGCCCT 204431 | | |||| | | |||||| ||| |||| |||||||| | || || || ||||||| Sbjct 919025 CCGTCGGTTCCTTGTTCCACATCTCGTACTGCAAGATGCCCTTGCTCACCGGACTGCCCT 919084 Query 204432 TGTACGTC 204439 ||||||| Sbjct 919085 CGTACGTC 919092 Score = 114 bits (126), Expect = 2e-20 Identities = 338/514 (66%), Gaps = 8/514 (2%) Strand=Plus/Plus Query 204883 CTCCACGATCTCGGTGCACAAGTTACCGCACTTCACCACCCCCACATGCTGCTGGTTAGA 204942 |||||| ||||| ||||||||||| || || | || | || |||||||||| Sbjct 919452 CTCCACAATCTCAGTGCACAAGTTGGAACATTTGATGGTGCCGATATTCTGCTGGTTACT 919511 Query 204943 CTTGCGGTTACAGGAGTCCTTGTACATCATGAACGGCATTCCGTTCTCCATCTGAGATCG 205002 || || || || | |||||||||| |||| |||||| ||| | |||| || ||| Sbjct 919512 TTTACGATTGCAAGCATCCTTGTACAGCATGTACGGCACGCCGGTTTCCACTTGCGATTC 919571 Query 205003 CAGAATGTGGGTCCACAATTCGCGAGCCTCCACTTGCTTCACGTACATC--CCTTGAGAC 205060 | || ||||| || | |||| ||| || || | || | | || | | Sbjct 919572 GATTATCGCAAACCACAGATCCTGCGCCTTCACCTG--TCGCATAAAGCGACCCTCTTTC 919629 Query 205061 TCGTATTTTGTGTACAGCGCCACAAAGTCAGAACCGTACACGTCCATCAGCCCTGGACAT 205120 ||||| ||||||||| | | || || || | |||| ||||| ||||| Sbjct 919630 TCGTACCCCGTGTACAGCTTCTCGAACTCTTCGCCCCAGGTGTCCGATAGCCCGGGACAA 919689 Query 205121 TTTTTGGGACACATCAGAGACCACATCT-GATCGTCTTTCACCCTCTCCATAAACAGGTC 205179 | | || |||||||| |||||| | | ||| || ||| | || ||| |||||||| Sbjct 919690 TCGTGCGGGCACATCAGGCTCCACATTTCGTTCGCCTC-CACACGCTGCATGAACAGGTC 919748 Query 205180 GCTGATCCACAGGCCGTAAAACAGATCACGGGCCCTAATTCCGTCGTCTCCAAGGTTCTT 205239 |||||||| ||||||||| || || || | | | || | || ||| || Sbjct 919749 CGGTATCCACAGTGCGTAAAACATGTCCCGTGCGCGGACCTCCTCCTTGCCGGTGTTTTT 919808 Query 205240 TTTCAAGTCCAGCCAAGCCGCA-ATGTCGGCGTGCCACGGCTCTAACCACACGGCCATTG 205298 |||| || || || || | || ||| | ||||||||||| | | | ||| | || Sbjct 919809 CTTCAGATCGAGA-AACTCGAATATATCGCCATGCCACGGCTCGAGATAGATGGCGAATG 919867 Query 205299 CGCCTGGCCTCTTGTTCCCACCCTGGTCCACCATGCGAGTCATCGCGTTGAAAACTCGCA 205358 | || |||| |||||| || ||||| || || || | | | |||| | || |||| Sbjct 919868 CTCCAGGCCGCTTGTTACCGCCCTGATCGACGTACCGTGCCGTATTGTTGTAGACGCGCA 919927 Query 205359 GCATCGGCACCAGACCGTTGGCGGTCCCGTTCGT 205392 |||||||||||||||||| | |||||||||| Sbjct 919928 ACATCGGCACCAGACCGTTTGAAATCCCGTTCGT 919961 >seq2001 Length=1904535 Score = 158 bits (174), Expect = 2e-33 Identities = 241/340 (71%), Gaps = 5/340 (1%) Strand=Plus/Minus Query 159745 CAGCAACCTGTCTGCCACAAATTCGATGTAGCTAC-ACATCTGCTCACAGTTGATCCCCA 159803 |||||| | || |||||||| || ||||| || | ||||| | || ||||| || |||| Sbjct 1560512 CAGCAAACGATCGGCCACAAACTCAATGTA-CTGCGACATCAGATCGCAGTTCATGCCCA 1560454 Query 159804 GCAGCCTAACGGGGAGCGCTTCCGACAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCA 159863 ||| || || || || | || ||| ||||||| ||| ||| |||||| ||| | Sbjct 1560453 GCATATCCACCGGCAGTGCCTTCGTCAGGAACTCCTGCTCGATCAGGACCGCATCGCGGA 1560394 Query 159864 CAATCTGCGAGACACGTTCGTACCCCGGCTTGCCCAAAATGTGGTCCTTAAACAGGAGGC 159923 |||| || || || || | | |||||| || | | | ||| |||| |||| Sbjct 1560393 TGATCTCCGTCACGCGCTCCTTCGACGGCTTCTGCACCA---GATACTTGAACATCAGGC 1560337 Query 159924 ACGCAAAGTCGCAGTGCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGC 159983 | ||||||||||||||||| || ||||| || ||||| | |||||| || | | |||| | Sbjct 1560336 AGGCAAAGTCGCAGTGCAGCCCTTCGTCGCGCGAGATCAGCTCGTTCGAGAAGGTGAGTC 1560277 Query 159984 CCGGCATGATCCCACGCGGTTTGAGCCAAAAAATGGCCGCAAAAGCACCGCTAAAAAAGA 160043 | ||||| | ||||| || ||||| || || || || || ||||| || |||| Sbjct 1560276 CTGGCATCAGGCCACGTTTCTTCAGCCAGAAGATCGCGGCGAAGCTGCCGCTGAAGAAGA 1560217 Query 160044 TCCCCTCCACGGCCGCAAACGCCACGAGCCTCTCACCAAA 160083 | ||||| || || || || ||||||| || ||| ||||| Sbjct 1560216 TACCCTCAACCGCAGCGAATGCCACGACCCGCTCGCCAAA 1560177 Score = 113 bits (124), Expect = 7e-20 Identities = 125/167 (75%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 160205 ATCAGCTTCGAGTACATTTCTGCGTGCACATTTTCGATGGCCATCTGAAAGTTGTAGAAA 160264 |||||| ||||||||| || |||||||||||| || || ||||| ||| |||||| Sbjct 1559949 ATCAGCAGCGAGTACATCTCGCTGTGCACATTTTCCATCGCAATCTGGAAGCCGTAGAAG 1559890 Query 160265 TATGTCGCCTCCAGATACTGCACCTCCTGTGTGAACCTTTGACCCAGATTGGCATTAACC 160324 | ||||||| | |||||||||||| |||| | || ||||||| | || || Sbjct 1559889 CAGCGCGCCTCCGTAACCTGCACCTCCTGGCTGAAGCGTTCCACCAGATTCTCGTTCACG 1559830 Query 160325 AACCCGTCGGCGGCCGCAAAGAAAGCCAACACGTGAGAGATGAAATG 160371 | ||||||| || |||||||| |||| |||||| |||||||| || Sbjct 1559829 ATACCGTCGGACGCAGCAAAGAAGGCCAGCACGTGGGAGATGAAGTG 1559783 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795127140960880