Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20quadriannulatus_20[genbank_20GCA_5F000349065.1_202013- 03-28] 2,823 sequences; 283,828,998 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq224 122 6e-23 seq113 105 4e-18 >seq224 Length=3387546 Score = 122 bits (134), Expect = 6e-23 Identities = 153/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||| |||| ||| ||| ||||| |||||||||||||| ||| | || |||| ||| Sbjct 1793652 ACCAGATGAAGAGTGGATTCCTTCTGGATGTTATAGTCCGACAGGGTGCGGCCATCTTCC 1793711 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| ||||| || || || || || ||||| ||| |||| | ||||||||||| Sbjct 1793712 AGCTGCTTTCCAGCGAAGATCAGACGCTGCTGATCTGGCGGGATTCCCTCCTTGTCCTGG 1793771 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 ||||| |||||| | |||| || | |||||| || | || ||||| ||| Sbjct 1793772 ATCTTTGCCTTGACGTTCTCAATCGTATCCGATGGCTCAACCTCCAGAGTGATGGTCTTT 1793831 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 || || ||||| ||||| || ||||||||| Sbjct 1793832 CCGGTCAGAGTTTTCACGAAAATCTGCATA 1793861 Score = 122 bits (134), Expect = 6e-23 Identities = 157/215 (73%), Gaps = 4/215 (2%) Strand=Plus/Plus Query 34772 AACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATC 34831 ||||| |||| ||| || ||||| |||||||||||||| ||| | || |||| || Sbjct 1793879 AACCAGATGAAGGGTGGACTCCTTCTGGATGTTATAGTCCGACAGGGTGCGGCCATCCTC 1793938 Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891 |||||| ||||| || || || || || ||||| ||| |||| | ||||||||||| Sbjct 1793939 CAGCTGCTTTCCAGCGAAGATCAGACGCTGCTGATCTGGCGGGATTCCCTCCTTGTCCTG 1793998 Query 34892 AATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTT 34949 |||||| || || || || |||| || | || || |||| ||| ||||| Sbjct 1793999 GATCTTCGCCTTCAC--ATTCTCAATCGTATCGGATGGTTCGACCTCGAGGGTGATGGTC 1794056 Query 34950 TTTCCCGTGAGAGTCTTCACAAAGATCTGCATATT 34984 ||||| || ||||| ||||| || ||||||||||| Sbjct 1794057 TTTCCGGTCAGAGTTTTCACGAAAATCTGCATATT 1794091 >seq113 Length=3238079 Score = 105 bits (116), Expect = 4e-18 Identities = 142/196 (72%), Gaps = 4/196 (2%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||| || || | || |||| |||||||| || ||||| || Sbjct 854897 TCCTTCTGGATGTTGTAGTCGGACAGCGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAAG 854838 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || ||||| ||| |||| | ||||||||||| |||||| || || || Sbjct 854837 ATCAGACGCTGCTGATCTGGCGGGATTCCCTCCTTGTCCTGGATCTTCGCCTTCAC--AT 854780 Query 34911 GCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCA 34968 || |||| || || ||| || || | ||| ||||| || |||||||| || || | Sbjct 854779 TCTCGATCGTATCCGAGGGCTCGACCTCAAGGGTAATGGTCTTACCCGTGAGGGTTTTGA 854720 Query 34969 CAAAGATCTGCATATT 34984 | ||||||||||| || Sbjct 854719 CGAAGATCTGCATCTT 854704 Score = 84.2 bits (92), Expect = 1e-11 Identities = 138/197 (70%), Gaps = 4/197 (2%) Strand=Plus/Plus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 ||| ||||||||||| ||||| || || | || |||| |||||||| || ||||| || Sbjct 1949115 TTCCTTCTGAATGTTGTAGTCGGAGAGAGTGCGACCATCCTCCAGCTGCTTGCCGGCGAA 1949174 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || || || ||||| ||| | || | || |||||||| ||||| || || | Sbjct 1949175 GATCAGACGCTGCTGATCTGGGGGAATGCCTTCCTTGTCCTGGATCTTTGCCTTCAC--A 1949232 Query 34910 TGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTC 34967 | || |||| || | ||| || || | || ||||| || || ||||| || ||| Sbjct 1949233 TTCTCGATCGTGTCCGAAGGCTCGACCTCAAGTGTGATGGTCTTGCCGGTGAGTGTTTTC 1949292 Query 34968 ACAAAGATCTGCATATT 34984 || || |||||||| || Sbjct 1949293 ACGAAAATCTGCATGTT 1949309 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324622430879544